Construct: ORF ccsbBroadEn_01114

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012375.1_s300c1, BRDN0000456811
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NUP88 (4927)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4927 NUP88 nucleoporin 88 NM_002532.6 100% 100%
2 human 4927 NUP88 nucleoporin 88 NM_001320653.1 97.8% 97.7% 1644_1691del
3 human 4927 NUP88 nucleoporin 88 XM_017024694.2 82.3% 82.3% 0_1ins393
4 human 4927 NUP88 nucleoporin 88 XM_011523893.3 80.5% 80.4% 0_1ins393;1251_1298del
5 mouse 19069 Nup88 nucleoporin 88 NM_172394.3 86.7% 89.9% (many diffs)
6 mouse 19069 Nup88 nucleoporin 88 NM_001276406.1 86.1% 89.3% (many diffs)
7 mouse 19069 Nup88 nucleoporin 88 NM_001083331.2 85.4% 88.5% (many diffs)
8 mouse 19069 Nup88 nucleoporin 88 NR_075087.1 57.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2292
ORF length:
2223
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGCCGCC GAGGGACCGG TGGGCGACGG CGAGCTGTGG CAGACCTGGC
121TTCCTAACCA CGTCGTGTTC TTGCGGCTCC GGGAGGGACT GAAAAACCAG AGTCCAACCG
181AAGCTGAGAA ACCAGCTTCT TCGTCGTTGC CTTCGTCGCC GCCGCCGCAG TTGCTGACGA
241GAAACGTGGT CTTTGGCCTC GGCGGAGAGC TTTTCCTGTG GGACGGAGAA GACAGCTCCT
301TCTTAGTCGT TCGCCTTCGG GGCCCCAGCG GCGGCGGCGA AGAGCCCGCC CTGTCCCAGT
361ACCAGAGATT GCTTTGCATA AATCCACCCC TGTTTGAAAT CTATCAAGTC TTGTTAAGCC
421CAACACAACA TCATGTAGCA CTTATAGGAA TAAAAGGACT TATGGTATTA GAATTACCTA
481AAAGATGGGG GAAGAATTCT GAATTTGAAG GTGGAAAATC AACAGTGAAT TGTAGTACCA
541CTCCAGTTGC GGAGAGATTT TTCACCAGTT CCACCTCTCT GACTCTAAAG CATGCTGCAT
601GGTATCCAAG TGAAATCCTG GATCCCCACG TAGTGCTGTT AACATCAGAC AACGTAATCA
661GAATTTACTC ACTACGTGAG CCGCAGACAC CCACTAACGT GATAATACTT TCAGAAGCCG
721AAGAGGAAAG TCTAGTACTC AATAAAGGAA GGGCGTATAC CGCATCTCTA GGAGAGACAG
781CAGTTGCATT TGACTTTGGG CCATTGGCAG CAGTCCCAAA GACTCTATTT GGACAAAACG
841GCAAAGATGA AGTAGTGGCA TACCCACTGT ACATCTTATA TGAAAATGGA GAGACTTTCC
901TGACATACAT CAGTCTGTTA CACAGCCCTG GAAATATTGG AAAGCTGTTG GGTCCATTGC
961CCATGCATCC TGCGGCTGAA GATAACTATG GTTATGATGC GTGTGCTGTA CTCTGCTTAC
1021CCTGTGTCCC CAATATCTTA GTGATCGCTA CTGAATCAGG AATGCTGTAT CACTGTGTCG
1081TGCTAGAAGG GGAAGAAGAA GATGACCACA CGTCAGAAAA GTCCTGGGAT TCCAGGATTG
1141ACCTCATTCC TTCTCTGTAT GTGTTTGAAT GTGTTGAGTT GGAGCTTGCT TTGAAACTGG
1201CATCTGGAGA GGATGACCCT TTTGATTCTG ACTTTTCTTG TCCAGTCAAA CTTCATAGAG
1261ATCCCAAGTG TCCTTCAAGA TATCACTGTA CTCATGAAGC TGGTGTACAT AGTGTTGGGC
1321TAACTTGGAT TCATAAACTT CACAAATTTC TTGGATCAGA TGAAGAAGAT AAGGATAGTT
1381TACAGGAACT CTCTACAGAA CAGAAATGCT TTGTTGAACA CATCCTTTGT ACGAAGCCAT
1441TGCCCTGCAG GCAGCCAGCT CCAATTCGAG GATTTTGGAT TGTACCTGAC ATTCTGGGAC
1501CCACGATGAT CTGCATCACC AGTACCTATG AATGCCTCAT ATGGCCGTTA TTAAGTACAG
1561TCCATCCAGC GTCTCCTCCC CTGCTTTGTA CTCGAGAAGA TGTTGAAGTG GCAGAGTCTC
1621CCCTCCGTGT TCTGGCTGAA ACCCCAGATT CCTTTGAAAA GCATATTAGA AGCATTTTGC
1681AACGTAGTGT TGCCAATCCA GCATTTTTGA AAGCTTCTGA AAAGGACATA GCCCCTCCTC
1741CTGAAGAATG CCTTCAGCTC CTCAGCAGAG CCACCCAGGT GTTCAGAGAG CAGTACATTC
1801TCAAACAGGA CTTGGCAAAG GAGGAGATTC AGCGGAGGGT CAAATTATTA TGTGACCAAA
1861AAAAGAAACA ACTAGAAGAT CTCAGTTATT GTCGAGAAGA GAGGAAAAGT CTGCGGGAAA
1921TGGCTGAGCG TTTAGCTGAC AAATATGAGG AAGCTAAAGA AAAACAAGAG GATATCATGA
1981ACAGGATGAA AAAACTACTT CACAGTTTTC ACTCTGAGCT CCCAGTTCTC TCTGATAGTG
2041AGCGAGACAT GAAGAAAGAA TTACAGCTGA TACCTGATCA ACTTCGACAT TTGGGCAATG
2101CCATCAAACA GGTTACTATG AAAAAGGATT ATCAACAGCA AAAGATGGAG AAGGTGTTGA
2161GTCTTCCAAA ACCCACCATT ATTCTCAGTG CCTACCAGCG AAAGTGCATT CAGTCCATCC
2221TGAAAGAGGA GGGTGAACAT ATAAGGGAAA TGGTGAAGCA AATCAATGAT ATCCGCAATC
2281ATGTAAACTT CTTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat
2341caatttgttg caacgaac

Download FASTA (ORF) (Full)

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