Construct: ORF ccsbBroadEn_01120
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008059.1_s300c1, BRDN0000397537
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TNFRSF11B (4982)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4982 | TNFRSF11B | TNF receptor superfamily me... | NM_002546.4 | 100% | 100% | |
| 2 | mouse | 18383 | Tnfrsf11b | tumor necrosis factor recep... | NM_008764.3 | 84.2% | 85.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1269
- ORF length:
- 1203
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CAACTTGCTG TGCTGCGCGC TCGTGTTTCT GGACATCTCC ATTAAGTGGA 121 CCACCCAGGA AACGTTTCCT CCAAAGTACC TTCATTATGA CGAAGAAACC TCTCATCAGC 181 TGTTGTGTGA CAAATGTCCT CCTGGTACCT ACCTAAAACA ACACTGTACA GCAAAGTGGA 241 AGACCGTGTG CGCCCCTTGC CCTGACCACT ACTACACAGA CAGCTGGCAC ACCAGTGACG 301 AGTGTCTATA CTGCAGCCCC GTGTGCAAGG AGCTGCAGTA CGTCAAGCAG GAGTGCAATC 361 GCACCCACAA CCGCGTGTGC GAATGCAAGG AAGGGCGCTA CCTTGAGATA GAGTTCTGCT 421 TGAAACATAG GAGCTGCCCT CCTGGATTTG GAGTGGTGCA AGCTGGAACC CCAGAGCGAA 481 ATACAGTTTG CAAAAGATGT CCAGATGGGT TCTTCTCAAA TGAGACGTCA TCTAAAGCAC 541 CCTGTAGAAA ACACACAAAT TGCAGTGTCT TTGGTCTCCT GCTAACTCAG AAAGGAAATG 601 CAACACACGA CAACATATGT TCCGGAAACA GTGAATCAAC TCAAAAATGT GGAATAGATG 661 TTACCCTGTG TGAGGAGGCA TTCTTCAGGT TTGCTGTTCC TACAAAGTTT ACGCCTAACT 721 GGCTTAGTGT CTTGGTAGAC AATTTGCCTG GCACCAAAGT AAACGCAGAG AGTGTAGAGA 781 GGATAAAACG GCAACACAGC TCACAAGAAC AGACTTTCCA GCTGCTGAAG TTATGGAAAC 841 ATCAAAACAA AGACCAAGAT ATAGTCAAGA AGATCATCCA AGATATTGAC CTCTGTGAAA 901 ACAGCGTGCA GCGGCACATT GGACATGCTA ACCTCACCTT CGAGCAGCTT CGTAGCTTGA 961 TGGAAAGCTT ACCGGGAAAG AAAGTGGGAG CAGAAGACAT TGAAAAAACA ATAAAGGCAT 1021 GCAAACCCAG TGACCAGATC CTGAAGCTGC TCAGTTTGTG GCGAATAAAA AATGGCGACC 1081 AAGACACCTT GAAGGGCCTA ATGCACGCAC TAAAGCACTC AAAGACGTAC CACTTTCCCA 1141 AAACTGTCAC TCAGAGTCTA AAGAAGACCA TCAGGTTCCT TCACAGCTTC ACAATGTACA 1201 AATTGTATCA GAAGTTATTT TTAGAAATGA TAGGTAACCA GGTCCAATCA GTAAAAATAA 1261 GCTGCTTATA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1321 tttgttgcaa cgaac