Construct: ORF ccsbBroadEn_01170

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014304.1_s300c1, BRDN0000396793
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDZK1 (5174)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5174 PDZK1 PDZ domain containing 1 NM_001201325.2 100% 100%
2 human 5174 PDZK1 PDZ domain containing 1 NM_002614.4 100% 100%
3 human 5174 PDZK1 PDZ domain containing 1 NM_001371359.1 97.1% 96.9% (many diffs)
4 human 5174 PDZK1 PDZ domain containing 1 XM_024447616.1 96.2% 96.2% 1_60del
5 human 5174 PDZK1 PDZ domain containing 1 XM_011509616.3 93.8% 93.3% (many diffs)
6 human 5174 PDZK1 PDZ domain containing 1 XM_024447619.1 93.5% 93.3% (many diffs)
7 human 5174 PDZK1 PDZ domain containing 1 XM_024447620.1 93.5% 93.3% (many diffs)
8 human 5174 PDZK1 PDZ domain containing 1 NM_001201326.1 78.6% 78.6% 457_458ins333
9 human 100034743 PDZK1P1 PDZ domain containing 1 pse... NR_111936.1 64.2% (many diffs)
10 human 5174 PDZK1 PDZ domain containing 1 NM_001371361.1 60.1% 60.1% 0_1ins621
11 human 5174 PDZK1 PDZ domain containing 1 XM_017001467.2 60.1% 60.1% 0_1ins621
12 human 5174 PDZK1 PDZ domain containing 1 XR_002956801.1 44.7% (many diffs)
13 human 5174 PDZK1 PDZ domain containing 1 XR_002956798.1 43.9% 1_1626del;3184_3545del
14 human 5174 PDZK1 PDZ domain containing 1 XR_002956800.1 42.4% 1_1633del;2623_2735del;3304_3665del
15 human 5174 PDZK1 PDZ domain containing 1 XR_002956799.1 40.3% 1_1633del;2623_2735del;3304_3859del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1623
ORF length:
1557
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC CTCCACCTTC AACCCCCGAG AATGTAAACT GTCCAAGCAA GAAGGGCAAA
121ACTATGGCTT CTTCCTGCGA ATTGAGAAGG ACACCGAGGG CCACCTGGTC CGGGTGGTTG
181AGAAGTGTAG CCCAGCAGAG AAGGCTGGCC TTCAAGATGG AGACAGAGTT CTTAGGATCA
241ATGGTGTCTT TGTGGACAAA GAAGAACATA TGCAGGTTGT GGATCTGGTC AGAAAGAGTG
301GGAATTCAGT GACTTTACTA GTTCTGGATG GGGATTCCTA TGAGAAAGCA GTGAAAACAC
361GGGTGGACTT GAAAGAGTTG GGTCAAAGTC AGAAGGAGCA AGGTTTGAGT GATAATATAC
421TTTCCCCTGT GATGAATGGA GGTGTGCAAA CTTGGACCCA GCCCCGGCTC TGCTATCTCG
481TGAAGGAAGG AGGCAGCTAT GGCTTCTCTC TGAAAACTGT CCAAGGTAAA AAGGGGGTGT
541ACATGACTGA TATTACACCT CAAGGTGTGG CTATGAGAGC TGGAGTTCTG GCTGATGATC
601ACTTGATTGA AGTGAATGGA GAGAATGTAG AGGATGCCAG CCATGAGGAA GTGGTTGAAA
661AGGTGAAGAA GTCAGGAAGC CGTGTCATGT TCCTGCTGGT GGACAAAGAA ACTGACAAGC
721GTCATGTTGA GCAGAAGATA CAATTCAAAA GAGAAACAGC CAGTTTGAAA CTGTTACCCC
781ACCAGCCCCG AATTGTGGAG ATGAAGAAAG GAAGCAATGG CTATGGTTTC TATCTGAGGG
841CAGGCTCAGA ACAGAAAGGT CAAATCATCA AGGACATAGA TTCTGGAAGT CCAGCAGAGG
901AGGCTGGCTT GAAGAACAAT GATCTGGTAG TTGCTGTCAA CGGCGAGTCT GTGGAAACCC
961TGGATCATGA CAGTGTGGTA GAAATGATTA GAAAGGGTGG AGATCAGACT TCACTGTTGG
1021TGGTAGACAA AGAGACGGAC AACATGTACA GACTGGCTCA TTTTTCTCCA TTTCTCTACT
1081ATCAAAGTCA AGAACTGCCC AATGGCTCTG TCAAGGAGGC TCCAGCTCCT ACTCCCACTT
1141CTCTGGAAGT CTCAAGTCCA CCAGATACTA CAGAGGAAGT AGATCATAAG CCTAAACTCT
1201GCAGGCTGGC TAAAGGTGAA AATGGCTATG GCTTTCACTT AAATGCGATT CGGGGTCTGC
1261CAGGCTCATT CATCAAAGAG GTACAGAAGG GCGGTCCTGC TGACTTGGCT GGGCTAGAGG
1321ATGAGGATGT CATCATTGAA GTGAATGGGG TGAATGTGCT AGATGAACCC TATGAGAAGG
1381TGGTGGATAG AATCCAGAGC AGTGGGAAGA ATGTCACACT TCTAGTCTGT GGAAAGAAGG
1441CCTATGATTA TTTCCAAGCT AAGAAAATCC CTATTGTTTC CTCCCTGGCT GATCCACTTG
1501ACACCCCTCC AGATTCTAAA GAAGGAATAG TGGTGGAGTC AAACCATGAC TCGCACATGG
1561CAAAAGAACG GGCCCACAGT ACAGCCTCAC ATTCTTCTTC CAATTCTGAA GATACAGAGA
1621TGTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
1681gcaacgaac

Download FASTA (ORF) (Full)

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