Construct: ORF ccsbBroadEn_01336

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016187.1_s300c1, BRDN0000396665
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTGS2 (5743)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5743 PTGS2 prostaglandin-endoperoxide ... NM_000963.4 100% 100%
2 mouse 19225 Ptgs2 prostaglandin-endoperoxide ... NM_011198.4 85% 86.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1878
ORF length:
1812
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TCCAAAAAAG
61TTGGCATGCT CGCCCGCGCC CTGCTGCTGT GCGCGGTCCT GGCGCTCAGC CATACAGCAA
121ATCCTTGCTG TTCCCACCCA TGTCAAAACC GAGGTGTATG TATGAGTGTG GGATTTGACC
181AGTATAAGTG CGATTGTACC CGGACAGGAT TCTATGGAGA AAACTGCTCA ACACCGGAAT
241TTTTGACAAG AATAAAATTA TTTCTGAAAC CCACTCCAAA CACAGTGCAC TACATACTTA
301CCCACTTCAA GGGATTTTGG AACGTTGTGA ATAACATTCC CTTCCTTCGA AATGCAATTA
361TGAGTTATGT GTTGACATCC AGATCACATT TGATTGACAG TCCACCAACT TACAATGCTG
421ACTATGGCTA CAAAAGCTGG GAAGCCTTCT CTAACCTCTC CTATTATACT AGAGCCCTTC
481CTCCTGTGCC TGATGATTGC CCGACTCCCT TGGGTGTCAA AGGTAAAAAG CAGCTTCCTG
541ATTCAAATGA GATTGTGGAA AAATTGCTTC TAAGAAGAAA GTTCATCCCT GATCCCCAGG
601GCTCAAACAT GATGTTTGCA TTCTTTGCCC AGCACTTCAC GCATCAGTTT TTCAAGACAG
661ATCATAAGCG AGGGCCAGCT TTCACCAACG GGCTGGGCCA TGGGGTGGAC TTAAATCATA
721TTTACGGTGA AACTCTGGCT AGACAGCGTA AACTGCGCCT TTTCAAGGAT GGAAAAATGA
781AATATCAGAT AATTGATGGA GAGATGTATC CTCCCACAGT CAAAGATACT CAGGCAGAGA
841TGATCTACCC TCCTCAAGTC CCTGAGCATC TACGGTTTGC TGTGGGGCAG GAGGTCTTTG
901GTCTGGTGCC TGGTCTGATG ATGTATGCCA CAATCTGGCT GCGGGAACAC AACAGAGTAT
961GCGATGTGCT TAAACAGGAG CATCCTGAAT GGGGTGATGA GCAGTTGTTC CAGACAAGCA
1021GGCTAATACT GATAGGAGAG ACTATTAAGA TTGTGATTGA AGATTATGTG CAACACTTGA
1081GTGGCTATCA CTTCAAACTG AAATTTGACC CAGAACTACT TTTCAACAAA CAATTCCAGT
1141ACCAAAATCG TATTGCTGCT GAATTTAACA CCCTCTATCA CTGGCATCCC CTTCTGCCTG
1201ACACCTTTCA AATTCATGAC CAGAAATACA ACTATCAACA GTTTATCTAC AACAACTCTA
1261TATTGCTGGA ACATGGAATT ACCCAGTTTG TTGAATCATT CACCAGGCAA ATTGCTGGCA
1321GGGTTGCTGG TGGTAGGAAT GTTCCACCCG CAGTACAGAA AGTATCACAG GCTTCCATTG
1381ACCAGAGCAG GCAGATGAAA TACCAGTCTT TTAATGAGTA CCGCAAACGC TTTATGCTGA
1441AGCCCTATGA ATCATTTGAA GAACTTACAG GAGAAAAGGA AATGTCTGCA GAGTTGGAAG
1501CACTCTATGG TGACATCGAT GCTGTGGAGC TGTATCCTGC CCTTCTGGTA GAAAAGCCTC
1561GGCCAGATGC CATCTTTGGT GAAACCATGG TAGAAGTTGG AGCACCATTC TCCTTGAAAG
1621GACTTATGGG TAATGTTATA TGTTCTCCTG CCTACTGGAA GCCAAGCACT TTTGGTGGAG
1681AAGTGGGTTT TCAAATCATC AACACTGCCT CAATTCAGTC TCTCATCTGC AATAACGTGA
1741AGGGCTGTCC CTTTACTTCA TTCAGTGTTC CAGATCCAGA GCTCATTAAA ACAGTCACCA
1801TCAATGCAAG TTCTTCCCGC TCCGGACTAG ATGATATCAA TCCCACAGTA CTACTAAAAG
1861AACGTTCGAC TGAACTGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1921gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)