Construct: ORF ccsbBroadEn_01341
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002924.1_s300c1, BRDN0000393334
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPN4 (5775)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5775 | PTPN4 | protein tyrosine phosphatas... | NM_002830.4 | 100% | 100% | |
| 2 | mouse | 19258 | Ptpn4 | protein tyrosine phosphatas... | NM_019933.2 | 92.4% | 94.7% | (many diffs) |
| 3 | mouse | 19258 | Ptpn4 | protein tyrosine phosphatas... | XM_006529253.3 | 90.9% | 93% | (many diffs) |
| 4 | mouse | 19258 | Ptpn4 | protein tyrosine phosphatas... | XM_006529254.3 | 88.9% | 91% | (many diffs) |
| 5 | mouse | 19258 | Ptpn4 | protein tyrosine phosphatas... | XM_006529255.2 | 87.4% | 89.4% | (many diffs) |
| 6 | mouse | 19258 | Ptpn4 | protein tyrosine phosphatas... | XM_006529256.1 | 68.5% | 70.5% | (many diffs) |
| 7 | mouse | 19258 | Ptpn4 | protein tyrosine phosphatas... | XM_011247943.2 | 63.2% | 65.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2844
- ORF length:
- 2778
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CTCACGTTTC CGATTGCCTG CTGGCAGAAC CTACAATGTA CGAGCATCAG 121 AGTTGGCCCG AGACAGACAG CATACTGAAG TGGTTTGCAA CATCCTTCTT CTGGATAACA 181 CTGTACAAGC TTTCAAAGTC AATAAACATG ATCAGGGGCA AGTCTTGTTG GATGTCGTCT 241 TCAAGCATCT AGATTTGACT GAGCAGGACT ATTTTGGTTT ACAGTTGGCT GATGATTCCA 301 CAGATAACCC AAGGTGGCTG GATCCAAACA AACCAATAAG GAAGCAGCTA AAGAGAGGAT 361 CTCCTTACAG TTTGAACTTT AGAGTCAAAT TTTTTGTAAG TGACCCCAAC AAGTTACAAG 421 AAGAATATAC AAGGTACCAG TATTTTTTGC AAATTAAACA AGACATTCTT ACTGGAAGAT 481 TACCCTGTCC TTCTAATACT GCTGCCCTTT TAGCTTCATT TGCTGTTCAG TCTGAACTTG 541 GAGACTACGA TCAGTCAGAG AACTTGTCAG GCTACCTCTC AGATTATTCT TTCATTCCTA 601 ATCAACCTCA AGATTTTGAA AAAGAAATTG CAAAATTACA TCAGCAACAC ATAGGCTTAT 661 CTCCTGCAGA AGCAGAATTT AATTACCTAA ACACAGCACG TACCTTAGAA CTCTATGGAG 721 TTGAATTCCA CTATGCAAGG GATCAGAGTA ACAATGAAAT TATGATTGGA GTGATGTCAG 781 GAGGAATTCT GATTTATAAG AACAGGGTAC GAATGAATAC CTTTCCATGG TTGAAGATTG 841 TAAAAATTTC TTTTAAGTGC AAACAGTTTT TTATTCAACT TAGAAAAGAA TTGCATGAAT 901 CTAGAGAAAC ATTATTGGGA TTTAATATGG TGAATTACAG AGCATGTAAA AATTTGTGGA 961 AAGCATGTGT AGAACATCAC ACATTCTTCC GTTTGGACAG ACCACTTCCA CCTCAAAAGA 1021 ATTTTTTTGC ACATTATTTT ACATTAGGTT CAAAATTCCG GTACTGTGGG AGAACTGAAG 1081 TCCAATCAGT TCAGTATGGC AAAGAAAAGG CAAATAAAGA CAGGGTATTT GCAAGATCCC 1141 CAAGTAAGCC CTTGGCACGG AAATTAATGG ATTGGGAAGT AGTAAGCAGA AATTCAATAT 1201 CTGATGACAG GTTAGAAACA CAAAGTCTTC CATCACGATC TCCACCGGGA ACTCCTAATC 1261 ATCGAAATTC TACATTCACG CAGGAAGGAA CCCGGTTACG ACCATCTTCA GTTGGTCATT 1321 TGGTAGACCA TATGGTTCAT ACTTCCCCAA GCGAAGTGTT TGTAAATCAG AGATCTCCGT 1381 CATCAACACA AGCTAATAGC ATTGTTCTGG AATCATCACC ATCACAAGAG ACCCCTGGAG 1441 ATGGGAAGCC TCCAGCTTTA CCACCCAAAC AGTCAAAGAA AAACAGTTGG AACCAAATTC 1501 ATTATTCACA TTCGCAACAA GATCTAGAAA GTCATATTAA TGAAACATTT GATATTCCAT 1561 CTTCTCCTGA AAAACCCACT CCTAATGGTG GTATTCCACA TGATAATCTT GTCCTAATCA 1621 GAATGAAACC TGATGAAAAT GGGAGGTTTG GATTCAATGT AAAGGGAGGA TATGATCAGA 1681 AGATGCCTGT GATTGTGTCT CGAGTAGCAC CAGGAACACC TGCTGACCTC TGTGTCCCTA 1741 GACTGAATGA AGGGGACCAA GTTGTACTGA TCAATGGTCG GGACATTGCA GAACACACTC 1801 ATGATCAGGT TGTGCTGTTT ATTAAAGCTA GTTGTGAGAG ACATTCTGGG GAACTCATGC 1861 TTCTAGTTCG ACCTAATGCT GTATATGATG TAGTGGAAGA AAAGCTAGAA AATGAGCCAG 1921 ATTTCCAGTA TATTCCTGAG AAAGCCCCAC TAGATAGTGT GCATCAGGAT GACCATTCCC 1981 TGCGGGAGTC AATGATCCAG CTAGCTGAGG GGCTTATCAC TGGAACAGTC CTGACACAGT 2041 TTGATCAACT GTATCGGAAA AAACCTGGAA TGACAATGTC CTGTGCCAAA TTACCTCAGA 2101 ATATTTCCAA AAATAGATAC AGAGATATTT CGCCTTATGA TGCCACACGG GTCATTTTAA 2161 AAGGTAATGA AGACTACATC AATGCGAACT ATATAAATAT GGAAATTCCT TCTTCCAGCA 2221 TTATAAATCA GTACATTGCT TGTCAAGGGC CATTACCACA CACTTGTACA GATTTTTGGC 2281 AGATGACTTG GGAACAAGGC TCCTCTATGG TTGTAATGTT GACCACACAA GTTGAACGTG 2341 GCAGAGTTAA ATGTCACCAA TATTGGCCAG AACCCACAGG CAGTTCATCT TATGGATGCT 2401 ACCAAGTTAC CTGCCACTCT GAAGAAGGAA ACACTGCCTA TATCTTCAGG AAGATGACCC 2461 TATTTAACCA AGAGAAAAAT GAAAGTCGTC CACTCACTCA GATCCAGTAC ATAGCCTGGC 2521 CTGACCATGG AGTCCCTGAT GATTCGAGTG ACTTTCTAGA TTTTGTTTGT CATGTACGAA 2581 ACAAGAGGGC TGGCAAGGAA GAACCCGTTG TTGTCCATTG CAGTGCTGGA ATCGGAAGAA 2641 CTGGGGTTCT TATTACTATG GAAACAGCCA TGTGTCTCAT TGAATGCAAT CAGCCAGTTT 2701 ATCCACTAGA TATTGTAAGA ACAATGAGAG ATCAGCGAGC CATGATGATC CAAACACCTA 2761 GTCAATACAG ATTTGTATGT GAAGCTATTT TGAAAGTTTA TGAAGAAGGC TTTGTTAAAC 2821 CCTTAACAAC ATCAACAAAT AAATACCCAA CTTTCCTTGT ACAAAGTtgg cattataaga 2881 aagcattgct tatcaatttg ttgcaacgaa c