Construct: ORF ccsbBroadEn_01411
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005781.1_s300c1, BRDN0000388443
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RORC (6097)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6097 | RORC | RAR related orphan receptor C | NM_005060.4 | 100% | 100% | |
| 2 | human | 6097 | RORC | RAR related orphan receptor C | NM_001001523.2 | 95.8% | 95.3% | 1_1delAins50;3_4insCAA;7_8insGACCCACACCT |
| 3 | human | 6097 | RORC | RAR related orphan receptor C | XM_006711484.4 | 79.5% | 77.7% | 1_194del;233_437del |
| 4 | mouse | 19885 | Rorc | RAR-related orphan receptor... | NM_011281.3 | 87% | 88.9% | (many diffs) |
| 5 | mouse | 19885 | Rorc | RAR-related orphan receptor... | NM_001293734.1 | 83.2% | 84.7% | (many diffs) |
| 6 | mouse | 19885 | Rorc | RAR-related orphan receptor... | XM_006501163.2 | 57.5% | 51.8% | (many diffs) |
| 7 | mouse | 19885 | Rorc | RAR-related orphan receptor... | XM_006501164.3 | 54% | 52.5% | (many diffs) |
| 8 | mouse | 19885 | Rorc | RAR-related orphan receptor... | NR_121656.1 | 41.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1620
- ORF length:
- 1554
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CAGGGCCCCA CAGAGACAGC ACCGAGCCTC ACGGGAGCTG CTGGCTGCAA 121 AGAAGACCCA CACCTCACAA ATTGAAGTGA TCCCTTGCAA AATCTGTGGG GACAAGTCGT 181 CTGGGATCCA CTACGGGGTT ATCACCTGTG AGGGGTGCAA GGGCTTCTTC CGCCGGAGCC 241 AGCGCTGTAA CGCGGCCTAC TCCTGCACCC GTCAGCAGAA CTGCCCCATC GACCGCACCA 301 GCCGAAACCG ATGCCAGCAC TGCCGCCTGC AGAAATGCCT GGCGCTGGGC ATGTCCCGAG 361 ATGCTGTCAA GTTCGGCCGC ATGTCCAAGA AGCAGAGGGA CAGCCTGCAT GCAGAAGTGC 421 AGAAACAGCT GCAGCAGCGG CAACAGCAGC AACAGGAACC AGTGGTCAAG ACCCCTCCAG 481 CAGGGGCCCA AGGAGCAGAT ACCCTCACCT ACACCTTGGG GCTCCCAGAC GGGCAGCTGC 541 CCCTGGGCTC CTCGCCTGAC CTGCCTGAGG CTTCTGCCTG TCCCCCTGGC CTCCTGAAAG 601 CCTCAGGCTC TGGGCCCTCA TATTCCAACA ACTTGGCCAA GGCAGGGCTC AATGGGGCCT 661 CATGCCACCT TGAATACAGC CCTGAGCGGG GCAAGGCTGA GGGCAGAGAG AGCTTCTATA 721 GCACAGGCAG CCAGCTGACC CCTGACCGAT GTGGACTTCG TTTTGAGGAA CACAGGCATC 781 CTGGGCTTGG GGAACTGGGA CAGGGCCCAG ACAGCTACGG CAGCCCCAGT TTCCGCAGCA 841 CACCGGAGGC ACCCTATGCC TCCCTGACAG AGATAGAGCA CCTGGTGCAG AGCGTCTGCA 901 AGTCCTACAG GGAGACATGC CAGCTGCGGC TGGAGGACCT GCTGCGGCAG CGCTCCAACA 961 TCTTCTCCCG GGAGGAAGTG ACTGGCTACC AGAGGAAGTC CATGTGGGAG ATGTGGGAAC 1021 GGTGTGCCCA CCACCTCACC GAGGCCATTC AGTACGTGGT GGAGTTCGCC AAGAGGCTCT 1081 CAGGCTTTAT GGAGCTCTGC CAGAATGACC AGATTGTGCT TCTCAAAGCA GGAGCAATGG 1141 AAGTGGTGCT GGTTAGGATG TGCCGGGCCT ACAATGCTGA CAACCGCACG GTCTTTTTTG 1201 AAGGCAAATA CGGTGGCATG GAGCTGTTCC GAGCCTTGGG CTGCAGCGAG CTCATCAGCT 1261 CCATCTTTGA CTTCTCCCAC TCCCTAAGTG CCTTGCACTT TTCCGAGGAT GAGATTGCCC 1321 TCTACACAGC CCTTGTTCTC ATCAATGCCC ATCGGCCAGG GCTCCAAGAG AAAAGGAAAG 1381 TAGAACAGCT GCAGTACAAT CTGGAGCTGG CCTTTCATCA TCATCTCTGC AAGACTCATC 1441 GCCAAAGCAT CCTGGCAAAG CTGCCACCCA AGGGGAAGCT TCGGAGCCTG TGTAGCCAGC 1501 ATGTGGAAAG GCTGCAGATC TTCCAGCACC TCCACCCCAT CGTGGTCCAA GCCGCTTTCC 1561 CTCCACTCTA CAAGGAGCTC TTCAGCACTG AAACCGAGTC ACCTGTGGGG CTGTCCAAGT 1621 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 1681 acgaac