Construct: ORF ccsbBroadEn_01447

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005279.1_s300c1, BRDN0000394853
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPS6KA3 (6197)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 NM_004586.3 100% 100%
2 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_005274573.2 99.8% 99.8% 1224_1225insCAG
3 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545556.1 99% 99% 932_949del;1242_1243insCAG
4 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545555.1 97.9% 97.3% (many diffs)
5 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545563.3 96.2% 96.2% 0_1ins84
6 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029713.1 96.2% 96.2% 0_1ins84
7 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029714.2 96.2% 96.2% 0_1ins84
8 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029715.2 96.2% 96.2% 0_1ins84
9 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029716.1 96.2% 96.2% 0_1ins84
10 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029717.2 96.2% 96.2% 0_1ins84
11 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_006724507.3 96% 96% 0_1ins84;1140_1141insCAG
12 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029719.2 96% 96% 0_1ins84;1140_1141insCAG
13 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545557.2 95.4% 95.4% 0_1ins84;848_865del
14 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545558.2 95.4% 95.4% 0_1ins84;848_865del
15 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545560.1 95.4% 95.4% 0_1ins84;848_865del
16 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545561.2 95.4% 95.4% 0_1ins84;848_865del
17 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_017029718.2 94.7% 94% (many diffs)
18 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_005274577.3 94.6% 93.9% (many diffs)
19 human 6197 RPS6KA3 ribosomal protein S6 kinase A3 XM_011545562.2 94% 93.3% (many diffs)
20 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... NM_148945.2 94.4% 99.8% (many diffs)
21 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_017318353.1 91.5% 96.7% (many diffs)
22 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... NM_001346675.1 90.7% 96% (many diffs)
23 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_006528687.1 90.7% 96% (many diffs)
24 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_017318354.1 90.7% 96% (many diffs)
25 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_017318355.1 90.7% 96% (many diffs)
26 mouse 110651 Rps6ka3 ribosomal protein S6 kinase... XM_006528688.2 89.3% 94% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2289
ORF length:
2220
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCGCTGGCG CAGCTGGCGG ACCCGTGGCA GAAGATGGCT GTGGAGAGCC
121CGTCCGACAG CGCTGAGAAT GGACAGCAAA TTATGGATGA ACCTATGGGA GAGGAGGAGA
181TTAACCCACA AACTGAAGAA GTCAGTATCA AAGAAATTGC AATCACACAT CATGTAAAGG
241AAGGACATGA AAAGGCAGAT CCTTCCCAGT TTGAACTTTT AAAAGTATTA GGGCAGGGAT
301CATTTGGAAA GGTTTTCTTA GTTAAAAAAA TCTCAGGCTC TGATGCTAGG CAGCTTTATG
361CCATGAAGGT ATTGAAGAAG GCCACACTGA AAGTTCGAGA CCGAGTTCGG ACAAAAATGG
421AACGTGATAT CTTGGTAGAG GTTAATCATC CTTTTATTGT CAAGTTGCAT TATGCTTTTC
481AAACTGAAGG GAAGTTGTAT CTTATTTTGG ATTTTCTCAG GGGAGGAGAT TTGTTTACAC
541GCTTATCCAA AGAGGTGATG TTCACAGAAG AAGATGTCAA ATTCTACTTG GCTGAACTTG
601CACTTGCTTT AGACCATCTA CATAGCCTGG GAATAATTTA TAGAGACTTA AAACCAGAAA
661ATATACTTCT TGATGAAGAA GGTCACATCA AGTTAACAGA TTTCGGCCTA AGTAAAGAGT
721CTATTGACCA TGAAAAGAAG GCATATTCTT TTTGTGGAAC TGTGGAGTAT ATGGCTCCAG
781AAGTAGTTAA TCGTCGAGGT CATACTCAGA GTGCTGACTG GTGGTCTTTT GGTGTGTTAA
841TGTTTGAAAT GCTTACTGGT ACACTCCCTT TCCAAGGAAA AGATCGAAAA GAAACAATGA
901CTATGATTCT TAAAGCCAAA CTTGGAATGC CACAGTTTTT GAGTCCTGAA GCGCAGAGTC
961TTTTACGAAT GCTTTTCAAG CGAAATCCTG CAAACAGATT AGGTGCAGGA CCAGATGGAG
1021TTGAAGAAAT TAAAAGACAT TCATTTTTCT CAACGATAGA CTGGAATAAA CTGTATAGAA
1081GAGAAATTCA TCCGCCATTT AAACCTGCAA CGGGCAGGCC TGAAGATACA TTCTATTTTG
1141ATCCTGAGTT TACTGCAAAA ACTCCCAAAG ATTCACCTGG CATTCCACCT AGTGCTAATG
1201CACATCAGCT TTTTCGGGGG TTTAGTTTTG TTGCTATTAC CTCAGATGAT GAAAGCCAAG
1261CTATGCAGAC AGTTGGTGTA CATTCAATTG TTCAGCAGTT ACACAGGAAC AGTATTCAGT
1321TTACTGATGG ATATGAAGTA AAAGAAGATA TTGGAGTTGG CTCCTACTCT GTTTGCAAGA
1381GATGTATACA TAAAGCTACA AACATGGAGT TTGCAGTGAA GATTATTGAT AAAAGCAAGA
1441GAGACCCAAC AGAAGAAATT GAAATTCTTC TTCGTTATGG ACAGCATCCA AACATTATCA
1501CTCTAAAGGA TGTATATGAT GATGGAAAGT ATGTGTATGT AGTAACAGAA CTTATGAAAG
1561GAGGTGAATT GCTGGATAAA ATTCTTAGAC AAAAATTTTT CTCTGAACGA GAGGCCAGTG
1621CTGTCCTGTT CACTATAACT AAAACCGTTG AATATCTTCA CGCACAAGGG GTGGTTCATA
1681GAGACTTGAA ACCTAGCAAC ATTCTTTATG TGGATGAATC TGGTAATCCG GAATCTATTC
1741GAATTTGTGA TTTTGGCTTT GCAAAACAGC TGAGAGCGGA AAATGGTCTT CTCATGACTC
1801CTTGTTACAC TGCAAATTTT GTTGCACCAG AGGTTTTAAA AAGACAAGGC TATGATGCTG
1861CTTGTGATAT ATGGAGTCTT GGTGTCCTAC TCTATACAAT GCTTACCGGT TACACTCCAT
1921TTGCAAATGG TCCTGATGAT ACACCAGAGG AAATATTGGC ACGAATAGGT AGCGGAAAAT
1981TCTCACTCAG TGGTGGTTAC TGGAATTCTG TTTCAGACAC AGCAAAGGAC CTGGTGTCAA
2041AGATGCTTCA TGTAGACCCT CATCAGAGAC TGACTGCTGC TCTTGTGCTC AGACATCCTT
2101GGATCGTCCA CTGGGACCAA CTGCCACAAT ACCAACTAAA CAGACAGGAT GCACCACATC
2161TAGTAAAGGG TGCCATGGCA GCTACATATT CTGCTTTGAA CCGTAATCAG TCACCAGTTT
2221TGGAACCAGT AGGCCGCTCT ACTCTTGCTC AGCGGAGAGG TATTAAAAAA ATCACCTCAA
2281CAGCCCTGTT GCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa
2341tttgttgcaa cgaac

Download FASTA (ORF) (Full)