Construct: ORF ccsbBroadEn_01458
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010479.1_s300c1, BRDN0000394198
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Has stop codon in insert
Originally Annotated References:
- Gene:
- RPS20 (6224)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6224 | RPS20 | ribosomal protein S20 | NM_001023.3 | 100% | 100% | |
| 2 | human | 6224 | RPS20 | ribosomal protein S20 | NM_001146227.2 | 80.5% | 80.2% | (many diffs) |
| 3 | human | 54968 | TMEM70 | transmembrane protein 70 | NR_033334.1 | 14.5% | (many diffs) | |
| 4 | mouse | 67427 | Rps20 | ribosomal protein S20 | NM_026147.6 | 89.6% | 100% | (many diffs) |
| 5 | mouse | 625603 | Gm6607 | predicted gene 6607; 40S ri... | NR_033622.2 | 47.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 423
- ORF length:
- 357
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 CAGCCATGGC TTTTAAGGAT ACCGGAAAAA CACCCGTGGA GCCGGAGGTG GCAATTCACC 121 GAATTCGAAT CACCCTAACA AGCCGCAACG TAAAATCCTT GGAAAAGGTG TGTGCTGACT 181 TGATAAGAGG CGCAAAAGAA AAGAATCTCA AAGTGAAAGG ACCAGTTCGA ATGCCTACCA 241 AGACTTTGAG AATCACTACA AGAAAAACTC CTTGTGGTGA AGGTTCTAAG ACGTGGGATC 301 GTTTCCAGAT GAGAATTCAC AAGCGACTCA TTGACTTGCA CAGTCCTTCT GAGATTGTTA 361 AGCAGATTAC TTCCATCAGT ATTGAGCCAG GAGTTGAGGT GGAAGTCACC ATTGCAGATG 421 CTTAAGCAAC tttcttgtac aaagttggca ttataagaaa gcattgctta tcaatttgtt 481 gcaacgaac