Construct: ORF ccsbBroadEn_01473
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015172.1_s300c1, BRDN0000384975
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- S100A3 (6274)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6274 | S100A3 | S100 calcium binding protei... | NM_002960.2 | 100% | 100% | |
| 2 | mouse | 20197 | S100a3 | S100 calcium binding protei... | NM_011310.2 | 90% | 90% | (many diffs) |
| 3 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501171.3 | 90% | 90% | (many diffs) |
| 4 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501173.3 | 90% | 90% | (many diffs) |
| 5 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501174.1 | 90% | 90% | (many diffs) |
| 6 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501175.2 | 90% | 90% | (many diffs) |
| 7 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_006501176.2 | 90% | 90% | (many diffs) |
| 8 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_011240047.1 | 90% | 90% | (many diffs) |
| 9 | mouse | 20197 | S100a3 | S100 calcium binding protei... | XM_017319509.1 | 90% | 90% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 369
- ORF length:
- 303
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAATAAG 61 TTGGCATGGC CAGGCCTCTG GAGCAGGCGG TAGCTGCCAT CGTGTGCACC TTCCAGGAAT 121 ACGCAGGGCG CTGTGGGGAC AAATACAAGC TCTGCCAGGC GGAGCTCAAG GAGCTGCTGC 181 AGAAGGAGCT GGCCACCTGG ACCCCGACTG AGTTTCGGGA ATGTGACTAC AACAAATTCA 241 TGAGTGTTCT GGACACCAAC AAGGACTGCG AGGTGGACTT TGTGGAGTAT GTGCGCTCAC 301 TTGCCTGCCT CTGTCTCTAC TGCCACGAGT ACTTCAAGGA CTGCCCCTCA GAGCCCCCCT 361 GCTCCCAGTA CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 421 tttgttgcaa cgaac