Construct: ORF ccsbBroadEn_01517
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015848.1_s300c1, BRDN0000394910
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SELE (6401)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6401 | SELE | selectin E | NM_000450.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1899
- ORF length:
- 1830
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATTGCTTCA CAGTTTCTCT CAGCTCTCAC TTTGGTGCTT CTCATTAAAG 121 AGAGTGGAGC CTGGTCTTAC AACACCTCCA CGGAAGCTAT GACTTATGAT GAGGCCAGTG 181 CTTATTGTCA GCAAAGGTAC ACACACCTGG TTGCAATTCA AAACAAAGAA GAGATTGAGT 241 ACCTAAACTC CATATTGAGC TATTCACCAA GTTATTACTG GATTGGAATC AGAAAAGTCA 301 ACAATGTGTG GGTCTGGGTA GGAACCCAGA AACCTCTGAC AGAAGAAGCC AAGAACTGGG 361 CTCCAGGTGA ACCCAACAAT AGGCAAAAAG ATGAGGACTG CGTGGAGATC TACATCAAGA 421 GAGAAAAAGA TGTGGGCATG TGGAATGATG AGAGGTGCAG CAAGAAGAAG CTTGCCCTAT 481 GCTACACAGC TGCCTGTACC AATACATCCT GCAGTGGCCA CGGTGAATGT GTAGAGACCA 541 TCAATAATTA CACTTGCAAG TGTGACCCTG GCTTCAGTGG ACTCAAGTGT GAGCAAATTG 601 TGAACTGTAC AGCCCTGGAA TCCCCTGAGC ATGGAAGCCT GGTTTGCAGT CACCCACTGG 661 GAAACTTCAG CTACAATTCT TCCTGCTCTA TCAGCTGTGA TAGGGGTTAC CTGCCAAGCA 721 GCATGGAGAC CATGCAGTGT ATGTCCTCTG GAGAATGGAG TGCTCCTATT CCAGCCTGCA 781 ATGTGGTTGA GTGTGATGCT GTGACAAATC CAGCCAATGG GTTCGTGGAA TGTTTCCAAA 841 ACCCTGGAAG CTTCCCATGG AACACAACCT GTACATTTGA CTGTGAAGAA GGATTTGAAC 901 TAATGGGAGC CCAGAGCCTT CAGTGTACCT CATCTGGGAA TTGGGACAAC GAGAAGCCAA 961 CGTGTAAAGC TGTGACATGC AGGGCCGTCC GCCAGCCTCA GAATGGCTCT GTGAGGTGCA 1021 GCCATTCCCC TGCTGGAGAG TTCACCTTCA AATCATCCTG CAACTTCACC TGTGAGGAAG 1081 GCTTCATGTT GCAGGGACCA GCCCAGGTTG AATGCACCAC TCAAGGGCAG TGGACACAGC 1141 AAATCCCAGT TTGTGAAGCT TTCCAGTGCA CAGCCTTGTC CAACCCCGAG CGAGGCTACA 1201 TGAATTGTCT TCCTAGTGCT TCTGGCAGTT TCCGTTATGG GTCCAGCTGT GAGTTCTCCT 1261 GTGAGCAGGG TTTTGTGTTG AAGGGATCCA AAAGGCTCCA ATGTGGCCCC ACAGGGGAGT 1321 GGGACAACGA GAAGCCCACA TGTGAAGCTG TGAGATGCGA TGCTGTCCAC CAGCCCCCGA 1381 AGGGTTTGGT GAGGTGTGCT CATTCCCCTA TTGGAGAATT CACCTACAAG TCCTCTTGTG 1441 CCTTCAGCTG TGAGGAGGGA TTTGAATTAC ATGGATCAAC TCAACTTGAG TGCACATCTC 1501 AGGGACAATG GACAGAAGAG GTTCCTTCCT GCCAAGTGGT AAAATGTTCA AGCCTGGCAG 1561 TTCCGGGAAA GATCAACATG AGCTGCAGTG GGGAGCCCGT GTTTGGCACT GTGTGCAAGT 1621 TCGCCTGTCC TGAAGGATGG ACGCTCAATG GCTCTGCAGC TCGGACATGT GGAGCCACAG 1681 GACACTGGTC TGGCCTGCTA CCTACCTGTG AAGCTCCCAC TGAGTCCAAC ATTCCCTTGG 1741 TAGCTGGACT TTCTGCTGCT GGACTCTCCC TCCTGACATT AGCACCATTT CTCCTCTGGC 1801 TTCGGAAATG CTTACGGAAA GCAAAGAAAT TTGTTCCTGC CAGCAGCTGC CAAAGCCTTG 1861 AATCAGATGG AAGCTACCAA AAGCCTTCTT ACATCCTTTG GCCAACTTTC TTGTACAAAG 1921 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac