Construct: ORF ccsbBroadEn_01541
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006589.1_s300c1, BRDN0000396608
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC2A3 (6515)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6515 | SLC2A3 | solute carrier family 2 mem... | NM_006931.3 | 100% | 100% | |
| 2 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | NM_001286234.2 | 96.5% | 94.3% | (many diffs) |
| 3 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | NM_001286235.2 | 96.5% | 94.3% | (many diffs) |
| 4 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_005253315.4 | 96.5% | 94.3% | (many diffs) |
| 5 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_005253317.5 | 96.5% | 94.3% | (many diffs) |
| 6 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_011520562.1 | 96.5% | 94.3% | (many diffs) |
| 7 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_011520563.2 | 96.5% | 94.3% | (many diffs) |
| 8 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_017018846.1 | 96.5% | 94.3% | (many diffs) |
| 9 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_017018847.1 | 96.5% | 94.3% | (many diffs) |
| 10 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_024448849.1 | 96.5% | 94.3% | (many diffs) |
| 11 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | NM_001286233.2 | 92.3% | 90.1% | (many diffs) |
| 12 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | NM_153449.4 | 92.3% | 90.1% | (many diffs) |
| 13 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_017018841.1 | 92.1% | 90% | (many diffs) |
| 14 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_017018844.1 | 92.1% | 90% | (many diffs) |
| 15 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_017018845.2 | 92.1% | 90% | (many diffs) |
| 16 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_024448848.1 | 92.1% | 90% | (many diffs) |
| 17 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | NM_001286237.2 | 89.7% | 87.5% | (many diffs) |
| 18 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | NM_001286236.2 | 80.3% | 78% | (many diffs) |
| 19 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_011520564.2 | 80.3% | 78% | (many diffs) |
| 20 | human | 144195 | SLC2A14 | solute carrier family 2 mem... | XM_011520565.2 | 80.3% | 78% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1554
- ORF length:
- 1488
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GACACAGAAG GTCACCCCAG CTCTGATATT TGCCATCACA GTTGCTACAA 121 TCGGCTCTTT CCAATTTGGC TACAACACTG GGGTCATCAA TGCTCCTGAG AAGATCATAA 181 AGGAATTTAT CAATAAAACT TTGACGGACA AGGGAAATGC CCCACCCTCT GAGGTGCTGC 241 TCACGTCTCT CTGGTCCTTG TCTGTGGCCA TATTTTCCGT CGGGGGTATG ATCGGCTCCT 301 TTTCCGTCGG ACTCTTCGTC AACCGCTTTG GCAGGCGCAA TTCAATGCTG ATTGTCAACC 361 TGTTGGCTGT CACTGGTGGC TGCTTTATGG GACTGTGTAA AGTAGCTAAG TCGGTTGAAA 421 TGCTGATCCT GGGTCGCTTG GTTATTGGCC TCTTCTGCGG ACTCTGCACA GGTTTTGTGC 481 CCATGTACAT TGGAGAGATC TCGCCTACTG CCCTGCGGGG TGCCTTTGGC ACTCTCAACC 541 AGCTGGGCAT CGTTGTTGGA ATTCTGGTGG CCCAGATCTT TGGTCTGGAA TTCATCCTTG 601 GGTCTGAAGA GCTATGGCCG CTGCTACTGG GTTTTACCAT CCTTCCTGCT ATCCTACAAA 661 GTGCAGCCCT TCCATTTTGC CCTGAAAGTC CCAGATTTTT GCTCATTAAC AGAAAAGAAG 721 AGGAGAATGC TAAGCAGATC CTCCAGCGGT TGTGGGGCAC CCAGGATGTA TCCCAAGACA 781 TCCAGGAGAT GAAAGATGAG AGTGCAAGGA TGTCACAAGA AAAGCAAGTC ACCGTGCTAG 841 AGCTCTTTAG AGTGTCCAGC TACCGACAGC CCATCATCAT TTCCATTGTG CTCCAGCTCT 901 CTCAGCAGCT CTCTGGGATC AATGCTGTGT TCTATTACTC AACAGGAATC TTCAAGGATG 961 CAGGTGTTCA AGAGCCCATC TATGCCACCA TCGGCGCGGG TGTGGTTAAT ACTATCTTCA 1021 CTGTAGTTTC TCTATTTCTG GTGGAAAGGG CAGGAAGAAG GACTCTGCAT ATGATAGGCC 1081 TTGGAGGGAT GGCTTTTTGT TCCACGCTCA TGACTGTTTC TTTGTTATTA AAGGATAACT 1141 ATAATGGGAT GAGCTTTGTC TGTATTGGGG CTATCTTGGT CTTTGTAGCC TTCTTTGAAA 1201 TTGGACCAGG CCCCATTCCC TGGTTTATTG TGGCCGAACT CTTCAGCCAG GGCCCCCGCC 1261 CAGCTGCGAT GGCAGTGGCC GGCTGCTCCA ACTGGACCTC CAACTTCCTA GTCGGATTGC 1321 TCTTCCCCTC CGCTGCTCAC TATTTAGGAG CCTACGTTTT TATTATCTTC ACCGGCTTCC 1381 TCATTACCTT CTTGGCTTTT ACCTTCTTCA AAGTCCCTGA GACCCGTGGC AGGACTTTTG 1441 AGGATATCAC ACGGGCCTTT GAAGGGCAGG CACACGGTGC AGATAGATCT GGAAAGGACG 1501 GCGTCATGGA GATGAACAGC ATCGAGCCTG CTAAGGAGAC CACCACCAAT GTCTACCCAA 1561 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac