Construct: ORF ccsbBroadEn_01586
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003631.1_s300c1, BRDN0000385706
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SPINK1 (6690)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6690 | SPINK1 | serine peptidase inhibitor ... | NM_001354966.1 | 100% | 100% | |
| 2 | human | 6690 | SPINK1 | serine peptidase inhibitor ... | NM_003122.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 303
- ORF length:
- 237
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GGTAACAGGC ATCTTTCTTC TCAGTGCCTT GGCCCTGTTG AGTCTATCTG 121 GTAACACTGG AGCTGACTCC CTGGGAAGAG AGGCCAAATG TTACAATGAA CTTAATGGAT 181 GCACCAAGAT ATATGACCCT GTCTGTGGGA CTGATGGAAA TACTTATCCC AATGAATGCG 241 TGTTATGTTT TGAAAATCGG AAACGCCAGA CTTCTATCCT CATTCAAAAA TCTGGGCCTT 301 GCTGCCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 361 gcaacgaac