Construct: ORF ccsbBroadEn_01601
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010314.1_s300c1, BRDN0000386217
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SSTR1 (6751)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6751 | SSTR1 | somatostatin receptor 1 | NM_001049.3 | 100% | 100% | |
| 2 | mouse | 20605 | Sstr1 | somatostatin receptor 1 | NM_009216.3 | 89.2% | 98.7% | (many diffs) |
| 3 | mouse | 20605 | Sstr1 | somatostatin receptor 1 | XM_006515634.3 | 89.2% | 98.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1239
- ORF length:
- 1173
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT CCCCAATGGC ACCGCCTCCT CTCCTTCCTC CTCTCCTAGC CCCAGCCCGG 121 GCAGCTGCGG CGAAGGCGGC GGCAGCAGGG GCCCCGGGGC CGGCGCTGCG GACGGCATGG 181 AGGAGCCAGG GCGAAATGCG TCCCAGAACG GGACCTTGAG CGAGGGCCAG GGCAGCGCCA 241 TCCTGATCTC TTTCATCTAC TCCGTGGTGT GCCTGGTGGG GCTGTGTGGG AACTCTATGG 301 TCATCTACGT GATCCTGCGC TATGCCAAGA TGAAGACGGC CACCAACATC TACATCCTAA 361 ATCTGGCCAT TGCTGATGAG CTGCTCATGC TCAGCGTGCC CTTCCTAGTC ACCTCCACGT 421 TGTTGCGCCA CTGGCCCTTC GGTGCGCTGC TCTGCCGCCT CGTGCTCAGC GTGGACGCGG 481 TCAACATGTT CACCAGCATC TACTGTCTGA CTGTGCTCAG CGTGGACCGC TACGTGGCCG 541 TGGTGCATCC CATCAAGGCG GCCCGCTACC GCCGGCCCAC CGTGGCCAAG GTAGTAAACC 601 TGGGCGTGTG GGTGCTATCG CTGCTCGTCA TCCTGCCCAT CGTGGTCTTC TCTCGCACCG 661 CGGCCAACAG CGACGGCACG GTGGCTTGCA ACATGCTCAT GCCAGAGCCC GCTCAACGCT 721 GGCTGGTGGG CTTCGTGTTG TACACATTTC TCATGGGCTT CCTGCTGCCC GTGGGGGCTA 781 TCTGCCTGTG CTACGTGCTC ATCATTGCTA AGATGCGCAT GGTGGCCCTC AAGGCCGGCT 841 GGCAGCAGCG CAAGCGCTCG GAGCGCAAGA TCACCTTAAT GGTGATGATG GTGGTGATGG 901 TGTTTGTCAT CTGCTGGATG CCTTTCTACG TGGTGCAGCT GGTCAACGTG TTTGCTGAGC 961 AGGACGACGC CACGGTGAGT CAGCTGTCGG TCATCCTCGG CTATGCCAAC AGCTGCGCCA 1021 ACCCCATCCT CTATGGCTTT CTCTCAGACA ACTTCAAGCG CTCTTTCCAA CGCATCCTAT 1081 GCCTCAGCTG GATGGACAAC GCCGCGGAGG AGCCGGTTGA CTATTACGCC ACCGCGCTCA 1141 AGAGCCGTGC CTACAGTGTG GAAGACTTCC AACCTGAGAA CCTGGAGTCC GGCGGCGTCT 1201 TCCGTAATGG CACCTGCACG TCCCGGATCA CGACGCTCTG CCCAACTTTC TTGTACAAAG 1261 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac