Construct: ORF ccsbBroadEn_01624
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007026.1_s300c1, BRDN0000386626
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SUPV3L1 (6832)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NM_003171.5 | 100% | 100% | |
| 2 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NR_136626.2 | 92.1% | 1_58del;1657_1658ins76;2341_2401del | |
| 3 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NR_136627.2 | 87.3% | (many diffs) | |
| 4 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NM_001301683.2 | 83.3% | 83.3% | 0_1ins393 |
| 5 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NM_001323584.2 | 83.3% | 83.3% | 0_1ins393 |
| 6 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NM_001323585.2 | 82.8% | 78.8% | (many diffs) |
| 7 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NM_001323586.2 | 82.8% | 78.8% | (many diffs) |
| 8 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NM_001323587.2 | 58.1% | 58.1% | 0_1ins987 |
| 9 | human | 6832 | SUPV3L1 | Suv3 like RNA helicase | NM_001323588.2 | 58.1% | 58.1% | 0_1ins987 |
| 10 | mouse | 338359 | Supv3l1 | suppressor of var1, 3-like ... | NM_181423.2 | 84.4% | 87.6% | (many diffs) |
| 11 | mouse | 338359 | Supv3l1 | suppressor of var1, 3-like ... | XM_006513809.1 | 58% | 60% | (many diffs) |
| 12 | mouse | 338359 | Supv3l1 | suppressor of var1, 3-like ... | XR_001779543.1 | 32.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2424
- ORF length:
- 2358
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC CTTCTCCCGT GCCCTATTGT GGGCTCGGCT CCCGGCGGGG CGCCAGGCTG 121 GCCACCGGGC AGCCATCTGC TCTGCCCTTC GTCCCCACTT TGGGCCCTTT CCCGGGGTTC 181 TGGGGCAAGT TTCTGTCCTT GCCACCGCCT CCTCCTCTGC CTCCGGTGGC TCCAAAATAC 241 CAAACACGTC CTTGTTCGTG CCCCTGACTG TGAAACCTCA GGGCCCCAGC GCCGACGGCG 301 ACGTCGGGGC CGAGCTAACC CGGCCTCTGG ACAAGAATGA AGTAAAGAAG GTCTTAGACA 361 AATTTTACAA GAGGAAAGAA ATTCAGAAAC TGGGTGCTGA TTATGGACTT GATGCTCGTC 421 TCTTCCACCA AGCTTTCATA AGCTTTAGAA ATTATATTAT GCAGTCTCAT TCCCTGGATG 481 TGGACATTCA CATTGTTTTG AATGATATTT GCTTCGGTGC AGCTCATGCG GATGATTTAT 541 TCCCATTTTT CTTGAGACAT GCCAAACAAA TATTTCCTGT GTTGGACTGT AAGGATGATC 601 TACGTAAAAT CAGTGACTTA AGAATACCAC CTAACTGGTA CCCAGATGCT AGAGCCATGC 661 AGCGGAAGAT AATATTTCAT TCAGGCCCCA CAAACAGTGG AAAGACTTAT CACGCAATCC 721 AGAAATACTT CTCAGCAAAG TCTGGAGTGT ATTGTGGCCC TCTAAAATTA CTGGCACATG 781 AGATCTTCGA AAAGAGTAAT GCTGCTGGTG TGCCATGTGA CTTGGTGACA GGTGAAGAGC 841 GTGTGACAGT TCAGCCAAAT GGGAAACAGG CTTCACATGT TTCTTGTACA GTTGAGATGT 901 GCAGTGTTAC AACTCCTTAT GAAGTGGCTG TAATTGATGA AATTCAAATG ATTAGAGATC 961 CAGCCAGAGG ATGGGCCTGG ACCAGAGCAC TTCTAGGACT GTGTGCTGAA GAGGTTCATT 1021 TGTGTGGAGA ACCTGCTGCT ATTGACCTGG TGATGGAGCT TATGTACACA ACGGGGGAGG 1081 AAGTGGAGGT TCGAGACTAT AAGAGGCTTA CCCCCATTTC TGTGCTGGAC CATGCACTAG 1141 AATCTTTAGA TAACCTTCGG CCTGGGGACT GCATTGTCTG TTTTAGCAAG AATGATATTT 1201 ATTCTGTGAG TCGGCAGATT GAAATTCGGG GATTAGAATC AGCTGTTATA TATGGCAGTC 1261 TCCCACCTGG GACCAAACTT GCTCAAGCAA AAAAGTTTAA TGATCCCAAT GACCCATGCA 1321 AAATCTTGGT TGCTACAGAT GCAATTGGCA TGGGACTTAA TTTGAGCATA AGGAGAATTA 1381 TTTTTTACTC CCTTATAAAG CCCAGTATCA ATGAAAAGGG AGAGAGAGAA CTAGAACCAA 1441 TCACAACCTC TCAAGCCCTG CAGATTGCTG GCAGAGCTGG CAGATTCAGC TCACGGTTTA 1501 AAGAAGGAGA GGTTACAACA ATGAATCATG AAGATCTCAG TTTATTAAAG GAAATTTTGA 1561 AGAGGCCTGT GGATCCTATA AGGGCAGCTG GTCTTCATCC AACTGCTGAG CAGATTGAAA 1621 TGTTTGCCTA CCATCTCCCT GATGCAACAC TGTCCAATCT CATTGATATT TTTGTAGACT 1681 TTTCACAAGT TGATGGGCAG TATTTTGTCT GCAATATGGA TGATTTTAAA TTTTCTGCAG 1741 AGTTGATCCA GCATATTCCA CTAAGTCTGC GAGTGAGGTA TGTTTTCTGC ACAGCTCCTA 1801 TCAACAAGAA GCAGCCTTTT GTGTGTTCTT CACTGTTACA GTTTGCCAGG CAGTATAGCA 1861 GGAATGAGCC CCTGACCTTT GCATGGTTAC GCCGATACAT CAAATGGCCT TTACTTCCAC 1921 CTAAGAATAT TAAAGACCTC ATGGATCTTG AAGCTGTCCA CGATGTCTTG GATCTTTACT 1981 TGTGGCTAAG CTACCGATTT ATGGATATGT TTCCAGATGC CAGCCTTATT CGAGATCTCC 2041 AGAAAGAACT AGATGGTATT ATCCAAGATG GTGTGCACAA TATCACTAAA TTGATTAAAA 2101 TGTCTGAGAC GCATAAGCTG TTGAATTTGG AGGGCTTTCC ATCAGGGAGC CAGTCACGAT 2161 TGTCAGGAAC CTTAAAGAGC CAAGCTAGAA GGACACGCGG CACCAAAGCT CTAGGGAGTA 2221 AAGCTACTGA GCCACCCAGC CCCGATGCAG GAGAGCTGTC CCTTGCTTCC AGATTGGTGC 2281 AGCAAGGACT CCTCACTCCA GACATGCTGA AACAGCTAGA AAAAGAGTGG ATGACACAAC 2341 AAACTGAACA CAACAAAGAA AAAACAGAGT CTGGGACTCA TCCAAAAGGG ACGAGAAGAA 2401 AGAAGAAGGA ACCTGATTCG GACTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 2461 agcattgctt atcaatttgt tgcaacgaac