Construct: ORF ccsbBroadEn_01678
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014381.1_s300c1, BRDN0000387769
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TLR1 (7096)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7096 | TLR1 | toll like receptor 1 | NM_003263.4 | 100% | 100% | |
| 2 | human | 7096 | TLR1 | toll like receptor 1 | XM_005262662.5 | 100% | 100% | |
| 3 | human | 7096 | TLR1 | toll like receptor 1 | XM_011513742.3 | 100% | 100% | |
| 4 | human | 7096 | TLR1 | toll like receptor 1 | XM_011513745.3 | 100% | 100% | |
| 5 | human | 7096 | TLR1 | toll like receptor 1 | XM_017008571.2 | 100% | 100% | |
| 6 | human | 7096 | TLR1 | toll like receptor 1 | XM_017008572.2 | 100% | 100% | |
| 7 | human | 7096 | TLR1 | toll like receptor 1 | XM_024454196.1 | 100% | 100% | |
| 8 | human | 7096 | TLR1 | toll like receptor 1 | XM_024454197.1 | 100% | 100% | |
| 9 | human | 7096 | TLR1 | toll like receptor 1 | XM_024454198.1 | 100% | 100% | |
| 10 | human | 7096 | TLR1 | toll like receptor 1 | XR_925165.2 | 80.9% | 1_274del;2633_2912del | |
| 11 | human | 7096 | TLR1 | toll like receptor 1 | XR_925163.2 | 41.4% | 1_274del;2633_5689del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2427
- ORF length:
- 2358
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACTAGCATC TTCCATTTTG CCATTATCTT CATGTTAATA CTTCAGATCA 121 GAATACAATT ATCTGAAGAA AGTGAATTTT TAGTTGATAG GTCAAAAAAC GGTCTCATCC 181 ACGTTCCTAA AGACCTATCC CAGAAAACAA CAATCTTAAA TATATCGCAA AATTATATAT 241 CTGAGCTTTG GACTTCTGAC ATCTTATCAC TGTCAAAACT GAGGATTTTG ATAATTTCTC 301 ATAATAGAAT CCAGTATCTT GATATCAGTG TTTTCAAATT CAACCAGGAA TTGGAATACT 361 TGGATTTGTC CCACAACAAG TTGGTGAAGA TTTCTTGCCA CCCTACTGTG AACCTCAAGC 421 ACTTGGACCT GTCATTTAAT GCATTTGATG CCCTGCCTAT ATGCAAAGAG TTTGGCAATA 481 TGTCTCAACT AAAATTTCTG GGGTTGAGCA CCACACACTT AGAAAAATCT AGTGTGCTGC 541 CAATTGCTCA TTTGAATATC AGCAAGGTCT TGCTGGTCTT AGGAGAGACT TATGGGGAAA 601 AAGAAGACCC TGAGGGCCTT CAAGACTTTA ACACTGAGAG TCTGCACATT GTGTTCCCCA 661 CAAACAAAGA ATTCCATTTT ATTTTGGATG TGTCAGTCAA GACTGTAGCA AATCTGGAAC 721 TATCTAATAT CAAATGTGTG CTAGAAGATA ACAAATGTTC TTACTTCCTA AGTATTCTGG 781 CGAAACTTCA AACAAATCCA AAGTTATCAA ATCTTACCTT AAACAACATT GAAACAACTT 841 GGAATTCTTT CATTAGGATC CTCCAGCTGG TTTGGCATAC AACTGTATGG TATTTCTCAA 901 TTTCAAACGT GAAGCTACAG GGTCAGCTGG ACTTCAGAGA TTTTGATTAT TCTGGCACTT 961 CCTTGAAGGC CTTGTCTATA CACCAAGTTG TCAGCGATGT GTTCGGTTTT CCGCAAAGTT 1021 ATATCTATGA AATCTTTTCG AATATGAACA TCAAAAATTT CACAGTGTCT GGTACACGCA 1081 TGGTCCACAT GCTTTGCCCA TCCAAAATTA GCCCGTTCCT GCATTTGGAT TTTTCCAATA 1141 ATCTCTTAAC AGACACGGTT TTTGAAAATT GTGGGCACCT TACTGAGTTG GAGACACTTA 1201 TTTTACAAAT GAATCAATTA AAAGAACTTT CAAAAATAGC TGAAATGACT ACACAGATGA 1261 AGTCTCTGCA ACAATTGGAT ATTAGCCAGA ATTCTGTAAG CTATGATGAA AAGAAAGGAG 1321 ACTGTTCTTG GACTAAAAGT TTATTAAGTT TAAATATGTC TTCAAATATA CTTACTGACA 1381 CTATTTTCAG ATGTTTACCT CCCAGGATCA AGGTACTTGA TCTTCACAGC AATAAAATAA 1441 AGAGCATTCC TAAACAAGTC GTAAAACTGG AAGCTTTGCA AGAACTCAAT GTTGCTTTCA 1501 ATTCTTTAAC TGACCTTCCT GGATGTGGCA GCTTTAGCAG CCTTTCTGTA TTGATCATTG 1561 ATCACAATTC AGTTTCCCAC CCATCGGCTG ATTTCTTCCA GAGCTGCCAG AAGATGAGGT 1621 CAATAAAAGC AGGGGACAAT CCATTCCAAT GTACCTGTGA GCTAGGAGAA TTTGTCAAAA 1681 ATATAGACCA AGTATCAAGT GAAGTGTTAG AGGGCTGGCC TGATTCTTAT AAGTGTGACT 1741 ACCCGGAAAG TTATAGAGGA ACCCTACTAA AGGACTTTCA CATGTCTGAA TTATCCTGCA 1801 ACATAACTCT GCTGATCGTC ACCATCGTTG CCACCATGCT GGTGTTGGCT GTGACTGTGA 1861 CCTCCCTCTG CAGCTACTTG GATCTGCCCT GGTATCTCAG GATGGTGTGC CAGTGGACCC 1921 AGACCCGGCG CAGGGCCAGG AACATACCCT TAGAAGAACT CCAAAGAAAT CTCCAGTTTC 1981 ATGCATTTAT TTCATATAGT GGGCACGATT CTTTCTGGGT GAAGAATGAA TTATTGCCAA 2041 ACCTAGAGAA AGAAGGTATG CAGATTTGCC TTCATGAGAG AAACTTTGTT CCTGGCAAGA 2101 GCATTGTGGA AAATATCATC ACCTGCATTG AGAAGAGTTA CAAGTCCATC TTTGTTTTGT 2161 CTCCCAACTT TGTCCAGAGT GAATGGTGCC ATTATGAACT CTACTTTGCC CATCACAATC 2221 TCTTTCATGA AGGATCTAAT AGCTTAATCC TGATCTTGCT GGAACCCATT CCGCAGTACT 2281 CCATTCCTAG CAGTTATCAC AAGCTCAAAA GTCTCATGGC CAGGAGGACT TATTTGGAAT 2341 GGCCCAAGGA AAAGAGCAAA CGTGGCCTTT TTTGGGCTAA CTTAAGGGCA GCCATTAATA 2401 TTAAGCTGAC AGAGCAAGCA AAGAAATTGC CAACTTTCTT GTACAAAGTt ggcattataa 2461 gaaagcattg cttatcaatt tgttgcaacg aac