Transcript: Human XM_011513745.3

PREDICTED: Homo sapiens toll like receptor 1 (TLR1), transcript variant X10, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
TLR1 (7096)
Length:
7894
CDS:
792..3152

Additional Resources:

NCBI RefSeq record:
XM_011513745.3
NBCI Gene record:
TLR1 (7096)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011513745.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000364165 ACTTAAGGGCAGCCATTAATA pLKO_005 3103 CDS 100% 15.000 21.000 N TLR1 n/a
2 TRCN0000364166 TAGAATCCAGTATCTTGATAT pLKO_005 1028 CDS 100% 13.200 18.480 N TLR1 n/a
3 TRCN0000056735 CCGCAAAGTTATATCTATGAA pLKO.1 1734 CDS 100% 5.625 7.875 N TLR1 n/a
4 TRCN0000056734 CGATTCTTTCTGGGTGAAGAA pLKO.1 2729 CDS 100% 0.495 0.693 N TLR1 n/a
5 TRCN0000364167 GATGAAGTCTCTGCAACAATT pLKO_005 1979 CDS 100% 13.200 10.560 N TLR1 n/a
6 TRCN0000364168 TGGCAATATGTCTCAACTAAA pLKO_005 1196 CDS 100% 13.200 10.560 N TLR1 n/a
7 TRCN0000364170 CATGGCCAGGAGGACTTATTT pLKO_005 3038 CDS 100% 15.000 10.500 N TLR1 n/a
8 TRCN0000364169 ATTTGATGCCCTGCCTATATG pLKO_005 1166 CDS 100% 13.200 9.240 N TLR1 n/a
9 TRCN0000364171 GCAAATCTGGAACTATCTAAT pLKO_005 1431 CDS 100% 13.200 9.240 N TLR1 n/a
10 TRCN0000056733 CCTGCCTATATGCAAAGAGTT pLKO.1 1175 CDS 100% 4.950 3.465 N TLR1 n/a
11 TRCN0000056736 GCTTTGGACTTCTGACATCTT pLKO.1 968 CDS 100% 4.950 3.465 N TLR1 n/a
12 TRCN0000056737 GCATACAACTGTATGGTATTT pLKO.1 1598 CDS 100% 1.320 0.924 N TLR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011513745.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01678 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01678 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468761 GAATCCTTATGTGCAATCTACGTT pLX_317 20.4% 100% 100% V5 n/a
4 ccsbBroadEn_07073 pDONR223 100% 99.8% 99.6% None (many diffs) n/a
5 ccsbBroad304_07073 pLX_304 0% 99.8% 99.6% V5 (many diffs) n/a
6 TRCN0000480624 GTTATAGTAGTGGACTTAAGAAGC pLX_317 13.3% 99.8% 99.6% V5 (many diffs) n/a
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