Construct: ORF ccsbBroadEn_01825

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005183.1_s300c1, BRDN0000392482
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC30A2 (7780)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7780 SLC30A2 solute carrier family 30 me... NM_032513.5 100% 100%
2 human 7780 SLC30A2 solute carrier family 30 me... NM_001004434.3 86.8% 86.8% 270_416del
3 mouse 230810 Slc30a2 solute carrier family 30 (z... NM_001346578.1 68.6% 54.9% (many diffs)
4 mouse 230810 Slc30a2 solute carrier family 30 (z... XM_006538755.3 68.6% 54.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1035
ORF length:
969
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGCCAAGGAG AAGCAGCATC TGTTGGACGC CAGGCCGGCA ATCCGGTCAT
121ACACGGGATC TCTGTGGCAG GAAGGGGCTG GCTGGATTCC TCTGCCCCGA CCTGGCCTGG
181ACTTGCAGGC CATTGAGCTG GCTGCCCAGA GCAACCATCA CTGCCATGCT CAGAAGGGTC
241CTGACAGTCA CTGTGACCCC AAGAAGGGGA AGGCCCAGCG CCAGCTGTAT GTAGCCTCTG
301CCATCTGCCT GTTGTTCATG ATCGGAGAAG TCGTTGAGAT CTTGGGAGCC CTGGTCTCTG
361TACTGTCCAT CTGGGTCGTG ACGGGGGTAC TGGTGTACCT GGCTGTGGAG CGGCTGATCT
421CTGGGGACTA TGAAATTGAC GGGGGGACCA TGCTGATCAC GTCGGGCTGC GCTGTGGCTG
481TGAACATCAT AATGGGGTTG ACCCTTCACC AGTCTGGCCA TGGGCACAGC CACGGCACCA
541CCAACCAGCA GGAGGAGAAC CCCAGCGTCC GAGCTGCCTT CATCCATGTG ATCGGCGACT
601TTATGCAGAG CATGGGTGTC CTAGTGGCAG CCTATATTTT ATACTTCAAG CCAGAATACA
661AGTATGTAGA CCCCATCTGC ACCTTCGTCT TCTCCATCCT GGTCCTGGGG ACAACCTTGA
721CCATCCTGAG AGATGTGATC CTGGTGTTGA TGGAAGGGAC CCCCAAGGGC GTTGACTTCA
781CAGCTGTTCG TGATCTGCTG CTGTCGGTGG AGGGGGTAGA AGCCCTGCAC AGCCTGCATA
841TCTGGGCACT GACGGTGGCC CAGCCTGTTC TGTCTGTCCA CATCGCCATT GCTCAGAATA
901CAGACGCCCA GGCTGTGCTG AAGACAGCCA GCAGCCGCCT CCAAGGGAAG TTCCACTTCC
961ACACCGTGAC CATCCAGATC GAGGACTACT CGGAGGACAT GAAGGACTGT CAGGCATGCC
1021AGGGCCCCTC AGACTGCCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1081tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)