Construct: ORF ccsbBroadEn_01834
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013578.1_s300c1, BRDN0000388799
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MALL (7851)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7851 | MALL | mal, T cell differentiation... | NM_005434.5 | 100% | 100% | |
| 2 | human | 7851 | MALL | mal, T cell differentiation... | NM_001371559.1 | 78% | 66.2% | (many diffs) |
| 3 | human | 7851 | MALL | mal, T cell differentiation... | NM_001371560.1 | 72.5% | 72.5% | 272_273ins126 |
| 4 | mouse | 228576 | Mall | mal, T cell differentiation... | NM_145532.3 | 81.9% | 83.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 525
- ORF length:
- 459
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CTCGCCCGAC CCGCCCGCCA CCAGCTACGC CCCGTCCGAC GTGCCCTCGG 121 GGGTCGCGCT GTTCCTCACC ATCCCTTTCG CCTTCTTCCT GCCCGAGCTG ATATTTGGGT 181 TCTTGGTCTG GACCATGGTA GCCGCCACCC ACATAGTATA CCCCTTGCTG CAAGGATGGG 241 TGATGTATGT CTCGCTCACC TCGTTTCTCA TCTCCTTGAT GTTCCTGTTG TCTTACTTGT 301 TTGGATTTTA CAAAAGATTT GAATCCTGGA GAGTTCTGGA CAGCCTGTAC CACGGGACCA 361 CTGGCATCCT GTACATGAGC GCTGCCGTCC TACAAGTACA TGCCACGATT GTTTCTGAGA 421 AACTGCTGGA CCCAAGAATT TACTACATTA ATTCGGCAGC CTCGTTCTTC GCCTTCATCG 481 CCACGCTGCT CTACATTCTC CATGCCTTCA GCATCTATTA CCACTGCCCA ACTTTCTTGT 541 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c