Construct: ORF ccsbBroadEn_01874
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002656.1_s300c1, BRDN0000394353
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZRSR2 (8233)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | NM_005089.3 | 100% | 100% | |
| 2 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_017029881.2 | 96.4% | 96.7% | (many diffs) |
| 3 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_011545589.3 | 88.3% | 87.7% | (many diffs) |
| 4 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_005274597.3 | 68.3% | 68.3% | (many diffs) |
| 5 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_017029882.2 | 68.3% | 68.3% | (many diffs) |
| 6 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_017029883.2 | 68.3% | 68.3% | (many diffs) |
| 7 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_024452455.1 | 68.3% | 68.3% | (many diffs) |
| 8 | human | 8233 | ZRSR2 | zinc finger CCCH-type, RNA ... | XM_024452456.1 | 68.3% | 68.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1515
- ORF length:
- 1446
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTGCGCCC GAGAAGATGA CGTTTCCCGA GAAACCAAGC CACAAAAAGT 121 ACAGGGCCGC CCTGAAGAAG GAGAAACGAA AGAAACGTCG GCAGGAACTT GCTCGACTGA 181 GAGACTCAGG ACTCTCACAG AAGGAGGAAG AGGAGGACAC TTTTATTGAA GAACAACAAC 241 TAGAAGAAGA GAAGCTATTG GAAAGAGAGA GGCAAAGATT ACATGAGGAG TGGTTGCTAA 301 GAGAGCAGAA GGCACAAGAA GAATTCAGAA TAAAGAAGGA AAAGGAAGAG GCGGCTAAAA 361 AACGGCAAGA AGAACAAGAG AGAAAGTTAA AGGAACAATG GGAAGAACAG CAGAGGAAAG 421 AGAGAGAAGA GGAGGAGCAG AAACGACAGG AGAAGAAAGA AAAAGAGGAA GCTTTGCAGA 481 AGATGCTGGA TCAGGCTGAA AATGAGTTGG AAAATGGTAC CACATGGCAA AACCCAGAAC 541 CACCCGTGGA TTTCAGAGTA ATGGAGAAGG ATCGAGCTAA TTGTCCCTTC TACAGTAAAA 601 CAGGAGCTTG CAGATTTGGA GATAGATGTT CACGTAAACA TAATTTCCCA ACATCCAGTC 661 CTACCCTTCT TATTAAGAGC ATGTTTACGA CGTTTGGAAT GGAGCAGTGC AGGAGGGATG 721 ACTATGACCC TGACGCAAGC CTGGAGTACA GCGAGGAAGA AACCTACCAA CAGTTCCTAG 781 ACTTCTATGA GGATGTGTTG CCCGAGTTCA AGAACGTGGG GAAAGTGATT CAGTTCAAGG 841 TCAGCTGCAA TTTGGAACCT CACCTGAGGG GCAATGTATA TGTTCAGTAC CAGTCGGAAG 901 AAGAATGCCA AGCAGCCCTT TCTCTGTTTA ACGGACGATG GTATGCAGGA CGACAGCTGC 961 AGTGTGAATT CTGCCCCGTG ACCCGGTGGA AAATGGCGAT TTGTGGTTTA TTTGAAATAC 1021 AACAATGTCC AAGAGGAAAG CACTGCAACT TTCTTCATGT GTTCAGAAAT CCCAACAATG 1081 AATTCTGGGA AGCTAATAGA GACATCTACT TGTCTCCAGA TCGGACTGGC TCCTCCTTTG 1141 GGAAGAACTC CGAAAGGAGG GAGAGGATGG GCCACCACGA CGACTACTAC AGCAGGCTGC 1201 GGGGAAGGAG AAACCCTAGT CCAGACCACT CCTACAAAAG AAATGGGGAA TCCGAGAGGA 1261 AAAGTAGTCG TCACAGGGGG AAGAAATCTC ACAAACGCAC ATCAAAGAGT CGGGAGAGGC 1321 ACAATTCACG AAGCAGAGGA AGAAATAGGG ACCGCAGCAG GGACCGCAGC CGGGGCCGGG 1381 GCAGCCGGAG CCGGAGCCGG AGCCGGAGCC GCAGGAGCCG CCGCAGCCGG AGCCAAAGTT 1441 CCTCTAGGTC CCGAAGTCGT GGCAGGAGGA GGTCGGGTAA TAGAGACAGA ACTGTTCAGA 1501 GTCCCAAATC CAAATTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 1561 tatcaatttg ttgcaacgaa c