Construct: ORF ccsbBroadEn_01886
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005363.1_s300c1, BRDN0000396934
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNN (8303)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8303 | SNN | stannin | NM_003498.6 | 100% | 100% | |
| 2 | human | 8303 | SNN | stannin | XM_017023742.1 | 100% | 100% | |
| 3 | human | 8303 | SNN | stannin | XM_017023741.1 | 65.6% | 65.6% | 1_138del |
| 4 | mouse | 20621 | Snn | stannin | NM_009223.3 | 89% | 97.7% | (many diffs) |
| 5 | mouse | 20621 | Snn | stannin | XM_006521880.1 | 89% | 97.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 330
- ORF length:
- 264
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TATTATGGAC CACAGCCCCA CCACGGGCGT GGTCACAGTC ATCGTCATCC 121 TCATTGCCAT CGCGGCCCTG GGGGCCTTGA TCCTGGGCTG CTGGTGCTAC CTGCGGCTGC 181 AGCGCATCAG CCAGTCAGAG GACGAGGAGA GCATCGTGGG GGATGGGGAG ACCAAGGAAC 241 CCTTCCTGCT GGTGCAGTAT TCGGCCAAGG GACCGTGCGT GGAGAGAAAG GCCAAGCTGA 301 TGACTCCCAA CGGCCCGGAA GTCCACGGCT GCCCAACTTT CTTGTACAAA GTtggcatta 361 taagaaagca ttgcttatca atttgttgca acgaac