Construct: ORF ccsbBroadEn_01888

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010167.1_s300c1, BRDN0000393285
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ACOX3 (8310)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8310 ACOX3 acyl-CoA oxidase 3, pristanoyl NM_001101667.1 100% 100%
2 human 8310 ACOX3 acyl-CoA oxidase 3, pristanoyl XM_005248013.3 100% 100%
3 human 8310 ACOX3 acyl-CoA oxidase 3, pristanoyl XM_011513566.1 92.5% 87.6% (many diffs)
4 human 8310 ACOX3 acyl-CoA oxidase 3, pristanoyl NM_003501.3 89.1% 86.2% 1827_1894del;1941_2100del
5 human 8310 ACOX3 acyl-CoA oxidase 3, pristanoyl XM_005248011.4 89.1% 86.2% 1827_1894del;1941_2100del
6 human 8310 ACOX3 acyl-CoA oxidase 3, pristanoyl XM_011513565.2 89.1% 86.2% 1827_1894del;1941_2100del
7 human 8310 ACOX3 acyl-CoA oxidase 3, pristanoyl XM_024454237.1 82.9% 81.1% (many diffs)
8 human 8310 ACOX3 acyl-CoA oxidase 3, pristanoyl XR_925000.1 54.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1938
ORF length:
1872
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC ATCCACTGTG GAAGGAGGCG ACACAGCTCT GCTCCCAGAA TTCCCCAGGG
121GGCCCCTCGA TGCCTACCGA GCAAGAGCGT CCTTCAGCTG GAAGGAGCTG GCGCTGTTCA
181CGGAAGGGGA GGGCATGCTC CGCTTTAAGA AAACCATCTT CTCAGCTCTT GAGAATGACC
241CTCTTTTCGC TCGTTCCCCT GGAGCCGATC TGTCCTTGGA GAAGTATCGC GAGCTGAACT
301TCCTTCGATG CAAGCGGATC TTCGAGTATG ACTTCCTCAG TGTCGAAGAC ATGTTCAAGA
361GCCCTCTGAA GGTCCCCGCC TTGATTCAGT GCCTGGGCAT GTATGACTCT TCTCTGGCTG
421CCAAGTACCT CCTCCATAGC TTGGTTTTTG GATCAGCAGT TTACAGTTCT GGTTCTGAAA
481GACATCTCAC ATATATTCAA AAGATCTTCA GGATGGAGAT TTTTGGATGT TTTGCTCTGA
541CCGAATTAAG CCACGGCAGT AATACCAAGG CCATTCGCAC AACTGCCCAC TACGATCCTG
601CCACTGAGGA ATTCATCATA CATTCCCCTG ATTTCGAAGC TGCCAAGTTT TGGGTTGGCA
661ACATGGGCAA GACAGCCACT CACGCGGTGG TGTTTGCTAA GCTGTGTGTG CCAGGGGACC
721AGTGCCATGG GCTGCATCCC TTTATCGTGC AGATCCGGGA CCCGAAGACC CTTCTTCCCA
781TGCCTGGAGT GATGGTTGGC GACATAGGAA AAAAACTCGG GCAGAACGGT CTGGATAATG
841GTTTCGCCAT GTTCCACAAG GTCAGAGTTC CTCGCCAGAG CCTTCTGAAC CGGATGGGAG
901ACGTCACCCC CGAGGGCACC TATGTCAGCC CCTTTAAGGA CGTCAGGCAG CGCTTTGGAG
961CGTCCCTGGG GAGCCTGTCC TCGGGCCGGG TCTCCATCGT GAGCCTGGCC ATCCTTAACC
1021TAAAGCTGGC CGTGGCCATC GCTCTTCGCT TCTCAGCCAC TCGGCGTCAG TTTGGACCCA
1081CAGAGGAGGA GGAAATACCA GTGCTTGAGT ATCCAATGCA GCAATGGCGC TTGCTTCCAT
1141ATCTGGCAGC TGTCTACGCC TTAGACCATT TCTCCAAGTC GCTCTTCCTG GACCTGGTGG
1201AGCTCCAGCG AGGACTTGCA TCGGGAGACC GCAGCGCCAG ACAGGCAGAG CTTGGACGTG
1261AGATCCACGC CCTGGCATCG GCCAGCAAGC CCCTGGCCTC GTGGACCACC CAGCAAGGAA
1321TTCAGGAATG CCGGGAGGCG TGTGGAGGAC ACGGCTATCT GGCCATGAAC CGGTTGGGTG
1381TCCTTAGAGA TGACAACGAT CCCAACTGCA CATACGAAGG TGACAACAAC ATCCTGCTGC
1441AGCAGACAAG CAACTATTTG CTGGGTCTCC TGGCACACCA GGTCCACGAT GGAGCTTGCT
1501TCCGCAGTCC GCTGAAGTCA GTGGACTTTC TGGACGCCTA TCCCGGCATC CTTGACCAGA
1561AGTTTGAGGT CTCCAGTGTT GCCGACTGCT TGGACTCTGC AGTCGCCCTG GCAGCATACA
1621AGTGGCTGGT TTGCTACCTG CTCCGAGAGA CTTATCAAAA ATTAAACCAA GAGAAAAGAT
1681CAGGAAGCAG TGACTTTGAA GCAAGGAACA AATGCCAGGT GTCCCACGGC CGTCCGTTGG
1741CGCTGGCCTT CGTGGAGCTC ACGGTGGTCC AGAGGTTCCA CGAGCACGTG CACCAGCCTT
1801CCGTGCCGCC CTCGCTGCGG GCCGTGCTGG GGCGGCTCAG TGCTCTGTAC GCCCTGTGGT
1861CCCTGAGCCG CCACGCGGCC CTGCTCTACC GAGCTGAAAG ACGATGCAGT TGCCCTGGTA
1921GACGTGATCG CTCCTCCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1981gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)