Construct: ORF ccsbBroadEn_01888
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010167.1_s300c1, BRDN0000393285
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACOX3 (8310)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8310 | ACOX3 | acyl-CoA oxidase 3, pristanoyl | NM_001101667.1 | 100% | 100% | |
| 2 | human | 8310 | ACOX3 | acyl-CoA oxidase 3, pristanoyl | XM_005248013.3 | 100% | 100% | |
| 3 | human | 8310 | ACOX3 | acyl-CoA oxidase 3, pristanoyl | XM_011513566.1 | 92.5% | 87.6% | (many diffs) |
| 4 | human | 8310 | ACOX3 | acyl-CoA oxidase 3, pristanoyl | NM_003501.3 | 89.1% | 86.2% | 1827_1894del;1941_2100del |
| 5 | human | 8310 | ACOX3 | acyl-CoA oxidase 3, pristanoyl | XM_005248011.4 | 89.1% | 86.2% | 1827_1894del;1941_2100del |
| 6 | human | 8310 | ACOX3 | acyl-CoA oxidase 3, pristanoyl | XM_011513565.2 | 89.1% | 86.2% | 1827_1894del;1941_2100del |
| 7 | human | 8310 | ACOX3 | acyl-CoA oxidase 3, pristanoyl | XM_024454237.1 | 82.9% | 81.1% | (many diffs) |
| 8 | human | 8310 | ACOX3 | acyl-CoA oxidase 3, pristanoyl | XR_925000.1 | 54.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1938
- ORF length:
- 1872
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC ATCCACTGTG GAAGGAGGCG ACACAGCTCT GCTCCCAGAA TTCCCCAGGG 121 GGCCCCTCGA TGCCTACCGA GCAAGAGCGT CCTTCAGCTG GAAGGAGCTG GCGCTGTTCA 181 CGGAAGGGGA GGGCATGCTC CGCTTTAAGA AAACCATCTT CTCAGCTCTT GAGAATGACC 241 CTCTTTTCGC TCGTTCCCCT GGAGCCGATC TGTCCTTGGA GAAGTATCGC GAGCTGAACT 301 TCCTTCGATG CAAGCGGATC TTCGAGTATG ACTTCCTCAG TGTCGAAGAC ATGTTCAAGA 361 GCCCTCTGAA GGTCCCCGCC TTGATTCAGT GCCTGGGCAT GTATGACTCT TCTCTGGCTG 421 CCAAGTACCT CCTCCATAGC TTGGTTTTTG GATCAGCAGT TTACAGTTCT GGTTCTGAAA 481 GACATCTCAC ATATATTCAA AAGATCTTCA GGATGGAGAT TTTTGGATGT TTTGCTCTGA 541 CCGAATTAAG CCACGGCAGT AATACCAAGG CCATTCGCAC AACTGCCCAC TACGATCCTG 601 CCACTGAGGA ATTCATCATA CATTCCCCTG ATTTCGAAGC TGCCAAGTTT TGGGTTGGCA 661 ACATGGGCAA GACAGCCACT CACGCGGTGG TGTTTGCTAA GCTGTGTGTG CCAGGGGACC 721 AGTGCCATGG GCTGCATCCC TTTATCGTGC AGATCCGGGA CCCGAAGACC CTTCTTCCCA 781 TGCCTGGAGT GATGGTTGGC GACATAGGAA AAAAACTCGG GCAGAACGGT CTGGATAATG 841 GTTTCGCCAT GTTCCACAAG GTCAGAGTTC CTCGCCAGAG CCTTCTGAAC CGGATGGGAG 901 ACGTCACCCC CGAGGGCACC TATGTCAGCC CCTTTAAGGA CGTCAGGCAG CGCTTTGGAG 961 CGTCCCTGGG GAGCCTGTCC TCGGGCCGGG TCTCCATCGT GAGCCTGGCC ATCCTTAACC 1021 TAAAGCTGGC CGTGGCCATC GCTCTTCGCT TCTCAGCCAC TCGGCGTCAG TTTGGACCCA 1081 CAGAGGAGGA GGAAATACCA GTGCTTGAGT ATCCAATGCA GCAATGGCGC TTGCTTCCAT 1141 ATCTGGCAGC TGTCTACGCC TTAGACCATT TCTCCAAGTC GCTCTTCCTG GACCTGGTGG 1201 AGCTCCAGCG AGGACTTGCA TCGGGAGACC GCAGCGCCAG ACAGGCAGAG CTTGGACGTG 1261 AGATCCACGC CCTGGCATCG GCCAGCAAGC CCCTGGCCTC GTGGACCACC CAGCAAGGAA 1321 TTCAGGAATG CCGGGAGGCG TGTGGAGGAC ACGGCTATCT GGCCATGAAC CGGTTGGGTG 1381 TCCTTAGAGA TGACAACGAT CCCAACTGCA CATACGAAGG TGACAACAAC ATCCTGCTGC 1441 AGCAGACAAG CAACTATTTG CTGGGTCTCC TGGCACACCA GGTCCACGAT GGAGCTTGCT 1501 TCCGCAGTCC GCTGAAGTCA GTGGACTTTC TGGACGCCTA TCCCGGCATC CTTGACCAGA 1561 AGTTTGAGGT CTCCAGTGTT GCCGACTGCT TGGACTCTGC AGTCGCCCTG GCAGCATACA 1621 AGTGGCTGGT TTGCTACCTG CTCCGAGAGA CTTATCAAAA ATTAAACCAA GAGAAAAGAT 1681 CAGGAAGCAG TGACTTTGAA GCAAGGAACA AATGCCAGGT GTCCCACGGC CGTCCGTTGG 1741 CGCTGGCCTT CGTGGAGCTC ACGGTGGTCC AGAGGTTCCA CGAGCACGTG CACCAGCCTT 1801 CCGTGCCGCC CTCGCTGCGG GCCGTGCTGG GGCGGCTCAG TGCTCTGTAC GCCCTGTGGT 1861 CCCTGAGCCG CCACGCGGCC CTGCTCTACC GAGCTGAAAG ACGATGCAGT TGCCCTGGTA 1921 GACGTGATCG CTCCTCCTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 1981 gcttatcaat ttgttgcaac gaac