Construct: ORF ccsbBroadEn_01944

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006862.1_s300c1, BRDN0000456024
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MMP23B (8510)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8510 MMP23B matrix metallopeptidase 23B NM_006983.2 100% 100%
2 human 8510 MMP23B matrix metallopeptidase 23B XM_017002615.1 74.1% 74.1% 155_562del
3 human 8511 MMP23A matrix metallopeptidase 23A... NR_002946.1 73% 1_1delAins154;132_133ins140;878_906del
4 human 8510 MMP23B matrix metallopeptidase 23B XM_017002617.1 63.1% 63.1% 155_562del;1404_1405ins174
5 human 8510 MMP23B matrix metallopeptidase 23B XR_002957848.1 42.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1236
ORF length:
1170
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG CCGCGGGGCC CGTGTCCCCT CGGAGGCCCC GGGGGCAGGC GTCGAGCGCC
121GCTGGCTTGG AGCCGCGCTG GTCGCCCTGT GCCTCCTCCC CGCGCTGGTG CTGCTGGCCC
181GGCTGGGGGC CCCGGCGGTG CCGGCCTGGA GCGCAGCGCA GGGAGACGTC GCTGCGCTGG
241GCCTCTCGGC GGTCCCCCCC ACCCGGGTCC CGGGCCCACT GGCCCCCCGC AGACGCCGCT
301ACACGCTGAC TCCAGCCAGG CTGCGCTGGG ACCACTTCAA CCTCACCTAC AGGATCCTCT
361CCTTCCCGCG GAACCTGCTG AGCCCGCGGG AGACGCGGCG GGCCCTAGCT GCCGCCTTCC
421GCATGTGGAG CGACGTGTCC CCCTTCAGCT TCCGCGAGGT GGCCCCCGAG CAGCCCAGCG
481ACCTCCGGAT AGGCTTCTAC CCGATCAACC ACACGGACTG CCTGGTCTCC GCGCTGCACC
541ACTGCTTCGA CGGCCCCACG GGGGAGCTGG CCCACGCCTT CTTCCCCCCG CACGGCGGCA
601TCCACTTCGA CGACAGCGAG TACTGGGTCC TGGGCCCCAC GCGCTACAGC TGGAAGAAAG
661GCGTGTGGCT CACGGACCTG GTGCACGTGG CGGCCCACGA GATCGGCCAC GCGCTGGGCC
721TGATGCACTC ACAACACGGC CGGGCGCTCA TGCACCTGAA CGCCACGCTG CGCGGCTGGA
781AGGCGTTGTC CCAGGACGAG CTGTGGGGGC TGCACCGGCT CTACGGATGC CTCGACAGGC
841TGTTCGTGTG CGCGTCCTGG GCGCGGAGGG GCTTCTGCGA CGCTCGCCGG CGGCTCATGA
901AGAGGCTCTG CCCCAGCAGC TGCGACTTCT GCTACGAATT CCCCTTCCCC ACGGTGGCCA
961CCACCCCACC GCCCCCCAGG ACCAAAACCA GGCTGGTGCC CGAGGGCAGG AACGTGACCT
1021TCCGCTGCGG CCAGAAGATC CTCCACAAGA AAGGGAAAGT GTACTGGTAC AAGGACCAGG
1081AGCCCCTGGA GTTCTCCTAC CCCGGCTACC TGGCCCTGGG CGAGGCGCAC CTGAGCATCA
1141TCGCCAACGC CGTCAATGAG GGCACCTACA CCTGCGTGGT GCGCCGCCAG CAGCGCGTGC
1201TGACCACCTA CTCCTGGCGA GTCCGTGTGC GGGGCTGCCC AACTTTCTTG TACAAAGTTG
1261Gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)

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