Construct: ORF ccsbBroadEn_01967

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006893.1_s300c1, BRDN0000387026
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PLPP1 (8611)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8611 PLPP1 phospholipid phosphatase 1 NM_003711.4 100% 100%
2 human 8611 PLPP1 phospholipid phosphatase 1 NM_176895.2 90.5% 88.8% (many diffs)
3 human 8611 PLPP1 phospholipid phosphatase 1 XM_006714724.3 77.8% 75.3% 0_1ins37;21_22ins152
4 human 8611 PLPP1 phospholipid phosphatase 1 NR_103485.1 46.3% 1_449del;508_662del;1457_1840del
5 mouse 19012 Plpp1 phospholipid phosphatase 1 NM_008903.2 83.6% 83% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
918
ORF length:
852
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTT TGACAAGACG CGGCTGCCGT ACGTGGCCCT CGATGTGCTC TGCGTGTTGC
121TGGCTGGATT GCCTTTTGCA ATTCTTACTT CAAGGCATAC CCCCTTCCAA CGAGGAGTAT
181TCTGTAATGA TGAGTCCATC AAGTACCCTT ACAAAGAAGA CACCATACCT TATGCGTTAT
241TAGGTGGAAT AATCATTCCA TTCAGTATTA TCGTTATTAT TCTTGGAGAA ACCCTGTCTG
301TTTACTGTAA CCTTTTGCAC TCAAATTCCT TTATCAGGAA TAACTACATA GCCACTATTT
361ACAAAGCCAT TGGAACCTTT TTATTTGGTG CAGCTGCTAG TCAGTCCCTG ACTGACATTG
421CCAAGTATTC AATAGGCAGA CTGCGGCCTC ACTTCTTGGA TGTTTGTGAT CCAGATTGGT
481CAAAAATCAA CTGCAGCGAT GGTTACATTG AATACTACAT ATGTCGAGGG AATGCAGAAA
541GAGTTAAGGA AGGCAGGTTG TCCTTCTATT CAGGCCACTC TTCGTTTTCC ATGTACTGCA
601TGCTGTTTGT GGCACTTTAT CTTCAAGCCA GGATGAAGGG AGACTGGGCA AGACTCTTAC
661GCCCCACACT GCAATTTGGT CTTGTTGCCG TATCCATTTA TGTGGGCCTT TCTCGAGTTT
721CTGATTATAA ACACCACTGG AGCGATGTGT TGACTGGACT CATTCAGGGA GCTCTGGTTG
781CAATATTAGT TGCTGTATAT GTATCGGATT TCTTCAAAGA AAGAACTTCT TTTAAAGAAA
841GAAAAGAGGA GGACTCTCAT ACAACTCTGC ATGAAACACC AACAACTGGG AATCACTATC
901CGAGCAATCA CCAGCCTTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
961gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)