Construct: ORF ccsbBroadEn_02008

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002015.1_s300c1, BRDN0000386343
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDS2 (8760)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8760 CDS2 CDP-diacylglycerol synthase 2 NM_003818.4 100% 100%
2 human 8760 CDS2 CDP-diacylglycerol synthase 2 XM_006723660.2 85.7% 71.2% 980_999del;1182_1183ins173
3 human 8760 CDS2 CDP-diacylglycerol synthase 2 XM_011529390.1 82.4% 82.4% 0_1ins234
4 human 8760 CDS2 CDP-diacylglycerol synthase 2 XM_024452016.1 82.4% 82.4% 0_1ins234
5 mouse 110911 Cds2 CDP-diacylglycerol synthase... NM_138651.7 88.6% 96.1% (many diffs)
6 mouse 110911 Cds2 CDP-diacylglycerol synthase... NM_001291039.1 85.6% 92.8% (many diffs)
7 mouse 110911 Cds2 CDP-diacylglycerol synthase... NM_001291040.1 25% 27.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1401
ORF length:
1335
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC AGAGCTGAGG CAGAGGGTGG CCCATGAGCC GGTTGCGCCA CCCGAGGACA
121AGGAGTCAGA GTCAGAAGCA AAGGTAGATG GAGAGACTGC ATCGGACAGT GAGAGCCGGG
181CAGAATCCGC ACCCCTGCCA GTCTCTGCAG ATGATACCCC GGAGGTCCTC AATAGGGCCC
241TTTCCAACTT GTCTTCAAGA TGGAAGAACT GGTGGGTGAG AGGCATCCTG ACTTTGGCCA
301TGATTGCATT TTTCTTCATC ATCATTTACC TGGGACCAAT GGTTTTGATG ATAATCGTGA
361TGTGCGTTCA GATTAAGTGT TTCCATGAGA TAATCACTAT TGGCTACAAC GTCTACCACT
421CATATGATCT GCCCTGGTTC AGGACGCTCA GCTGGTACTT TCTCCTGTGT GTAAACTATT
481TCTTCTATGG TGAGACAGTG ACGGATTACT TCTTCACCCT GGTCCAGAGA GAAGAGCCTT
541TGCGGATTCT CAGTAAATAC CACCGGTTCA TTTCCTTTAC TCTCTATCTA ATAGGATTCT
601GCATGTTTGT ACTGAGTCTG GTCAAGAAGC ATTATCGACT GCAGTTCTAC ATGTTTGGCT
661GGACCCATGT GACATTGCTG ATTGTTGTAA CACAGTCACA TCTTGTTATC CACAACCTAT
721TTGAAGGAAT GATCTGGTTC ATTGTCCCCA TATCTTGTGT GATCTGTAAT GACATCATGG
781CCTATATGTT TGGCTTTTTC TTTGGTCGGA CCCCACTCAT CAAGCTGTCC CCGAAGAAGA
841CCTGGGAAGG CTTCATTGGG GGCTTCTTTG CTACTGTGGT GTTTGGCCTT CTGCTGTCCT
901ATGTGATGTC CGGGTACAGA TGCTTTGTCT GCCCTGTGGA GTACAACAAT GACACCAACA
961GCTTCACTGT GGACTGTGAG CCCTCGGACC TGTTTCGCCT GCAGGAGTAC AACATTCCTG
1021GGGTGATCCA GTCAGTCATT GGCTGGAAAA CGGTCCGGAT GTACCCCTTC CAGATTCACA
1081GCATCGCTCT CTCCACCTTT GCCTCGCTCA TTGGCCCCTT TGGAGGATTC TTCGCAAGTG
1141GATTCAAACG AGCCTTTAAA ATCAAAGACT TTGCCAATAC CATTCCTGGC CATGGAGGCA
1201TCATGGATCG CTTTGACTGC CAGTATCTGA TGGCCACCTT TGTCAATGTA TACATCGCCA
1261GTTTTATCAG AGGCCCTAAC CCAAGCAAAC TGATTCAGCA GTTCCTGACT TTACGGCCAG
1321ATCAGCAGCT CCACATCTTC AACACGCTGC GGTCTCATCT GATCGACAAA GGGATGCTGA
1381CATCCACCAC AGAGGACGAG TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1441attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)

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