Transcript: Mouse NM_001291039.1

Mus musculus CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2 (Cds2), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-04
Taxon:
Mus musculus (mouse)
Gene:
Cds2 (110911)
Length:
8089
CDS:
25..1308

Additional Resources:

NCBI RefSeq record:
NM_001291039.1
NBCI Gene record:
Cds2 (110911)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001291039.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000076245 GTGGATTCAAACGGGCCTTTA pLKO.1 1043 CDS 100% 10.800 15.120 N Cds2 n/a
2 TRCN0000309333 GTGGATTCAAACGGGCCTTTA pLKO_005 1043 CDS 100% 10.800 15.120 N Cds2 n/a
3 TRCN0000076243 GCGTGTTGTTTGTTCCAGTAA pLKO.1 3506 3UTR 100% 4.950 6.930 N Cds2 n/a
4 TRCN0000309331 GCGTGTTGTTTGTTCCAGTAA pLKO_005 3506 3UTR 100% 4.950 6.930 N Cds2 n/a
5 TRCN0000076244 CGGCTGCAGTTCTACATGTTT pLKO.1 541 CDS 100% 5.625 4.500 N Cds2 n/a
6 TRCN0000331939 CGGCTGCAGTTCTACATGTTT pLKO_005 541 CDS 100% 5.625 4.500 N Cds2 n/a
7 TRCN0000076247 CCTCAGTAAATACCACCGGTT pLKO.1 453 CDS 100% 2.160 1.728 N Cds2 n/a
8 TRCN0000076246 TGAGTCTAGTTAAGAAGCATT pLKO.1 518 CDS 100% 4.950 3.465 N Cds2 n/a
9 TRCN0000309332 TGAGTCTAGTTAAGAAGCATT pLKO_005 518 CDS 100% 4.950 3.465 N Cds2 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 4181 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001291039.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02008 pDONR223 100% 85.6% 92.8% None (many diffs) n/a
2 ccsbBroad304_02008 pLX_304 0% 85.6% 92.8% V5 (many diffs) n/a
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