Construct: ORF ccsbBroadEn_02034
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017680.1_s300c1, BRDN0000456251
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PROZ (8858)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8858 | PROZ | protein Z, vitamin K depend... | NM_003891.3 | 99.9% | 100% | 447A>G |
| 2 | human | 8858 | PROZ | protein Z, vitamin K depend... | NM_001256134.1 | 94.7% | 94.5% | 71_136del |
| 3 | human | 8858 | PROZ | protein Z, vitamin K depend... | XM_017020812.1 | 85.5% | 85.4% | 1_135del;206_271del;648A>G |
| 4 | human | 8858 | PROZ | protein Z, vitamin K depend... | XM_017020813.1 | 73.8% | 65.6% | (many diffs) |
| 5 | human | 8858 | PROZ | protein Z, vitamin K depend... | XR_001749709.1 | 57.9% | (many diffs) | |
| 6 | human | 8858 | PROZ | protein Z, vitamin K depend... | XR_001749708.1 | 53.7% | (many diffs) | |
| 7 | human | 8858 | PROZ | protein Z, vitamin K depend... | XR_001749707.1 | 32% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1269
- ORF length:
- 1200
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCAGGCTGC GTCCCACTGC TCCAGGGCCT GGTCCTGGTC CTCGCCCTCC 121 ATCGTGTGGA GCCCTCAGTA TTTCTCCCGG CCTCCAAAGC AAACGACGTT CTGGTGAGGT 181 GGAAGCGTGC GGGCTCCTAT CTTCTGGAAG AACTCTTCGA GGGAAACTTG GAAAAAGAAT 241 GTTATGAAGA AATCTGTGTC TATGAAGAAG CAAGAGAAGT GTTTGAAAAT GAAGTAGTCA 301 CTGATGAATT CTGGAGACGA TATAAGGGCG GCTCCCCGTG CATCTCCCAG CCCTGCCTCC 361 ACAACGGCTC TTGCCAGGAC AGCATCTGGG GCTACACCTG CACCTGCTCC CCCGGCTATG 421 AGGGCAGCAA CTGCGAGCTG GCTAAAAATG AATGTCACCC AGAGCGGACT GATGGGTGTC 481 AACACTTCTG CCTCCCAGGA CAGGAATCCT ACACGTGCAG CTGTGCTCAG GGCTACAGGC 541 TTGGTGAGGA CCACAAACAG TGTGTGCCCC ACGACCAGTG TGCCTGCGGG GTGCTGACCT 601 CTGAGAAGCG TGCACCGGAT CTACAGGACC TCCCGTGGCA GGTAAAGTTA ACAAATTCCG 661 AAGGAAAAGA CTTCTGTGGT GGTGTTATAA TACGGGAAAA TTTTGTACTG ACAACAGCAA 721 AATGTTCACT GTTACACAGG AATATTACTG TAAAAACATA TTTTAACAGA ACGAGCCAAG 781 ACCCGCTGAT GATCAAGATA ACGCACGTCC ATGTGCACAT GCGGTATGAC GCGGACGCGG 841 GGGAGAATGA CCTGTCACTG CTGGAGCTGG AGTGGCCCAT CCAGTGCCCA GGTGCGGGGC 901 TCCCCGTGTG CACCCCTGAG AAAGACTTCG CTGAGCACCT CCTCATCCCA CGCACCAGGG 961 GCCTCCTCAG CGGCTGGGCA CGCAATGGCA CTGACCTGGG CAACTCGCTG ACCACGCGGC 1021 CTGTCACACT TGTGGAGGGG GAGGAGTGCG GGCAGGTCCT GAATGTGACT GTCACCACCA 1081 GGACCTACTG TGAGAGAAGC AGCGTGGCGG CCATGCACTG GATGGATGGA AGTGTGGTCA 1141 CCAGAGAACA CAGAGGCTCC TGGTTTCTCA CGGGGGTCCT GGGCTCGCAG CCAGTAGGAG 1201 GGCAGGCTCA CATGGTCCTT GTCACCAAGG TCTCCAGGTA CTCACTCTGG TTTAAACAGA 1261 TCATGAACTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa 1321 tttgttgcaa cgaac