Construct: ORF ccsbBroadEn_02112
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003732.1_s300c1, BRDN0000394972
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TIAF1 (9220)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9220 | TIAF1 | TGFB1-induced anti-apoptoti... | NM_004740.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 414
- ORF length:
- 345
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCATCTCCA TCTTCACCCT TCAGAGAGCA GTCCTTTCTC TGTGCAGCTG 121 GAGACGCTGG TGAGGAGAGC CGGGTCCAGG TTCTTAAGAA TGAGGTGCGG AGGGGCTCTC 181 CGGTGCTGCT GGGCTGGGTT GAGCAAGCCT ACGCAGACAA GTGTGTGTGT GGACCATCCG 241 CACCTCCAGC CCCCACCCCA CCCTCTTTGT CTCAGCGTGT TATGTGCAAT GACCTATTTA 301 AGGTAAACCC ATTCCAACTA CAGCAGTTCA GGGCTGATCC AAGCACTGCC TCCCTCCTGC 361 TCTGTCCAGG TGGTCTGGAC CATAAACTCA ACTTGAGAGG GAAGGCTTGG GGTTTGCCAA 421 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac