Construct: ORF ccsbBroadEn_02178
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003193.1_s300c1, BRDN0000384940
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XAGE1D (9503)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 653220 | XAGE1A | X antigen family member 1A | NM_001097594.3 | 100% | 100% | |
| 2 | human | 653067 | XAGE1B | X antigen family member 1B | NM_001097604.2 | 100% | 100% | |
| 3 | human | 653220 | XAGE1A | X antigen family member 1A | NM_001097596.3 | 73.7% | 31.1% | 97_112del;207_208ins52 |
| 4 | human | 653067 | XAGE1B | X antigen family member 1B | NM_001097605.2 | 73.7% | 31.1% | 97_112del;207_208ins52 |
| 5 | human | 653067 | XAGE1B | X antigen family member 1B | XM_017029747.1 | 55.4% | 55.4% | 1_195del |
| 6 | human | 653220 | XAGE1A | X antigen family member 1A | XM_017029749.1 | 55.4% | 55.4% | 1_195del |
| 7 | human | 653067 | XAGE1B | X antigen family member 1B | XM_017029746.1 | 38.5% | 18% | 1_237del;334_349del;444_445ins52 |
| 8 | human | 653220 | XAGE1A | X antigen family member 1A | XM_017029748.1 | 38.5% | 18% | 1_237del;334_349del;444_445ins52 |
| 9 | human | 653220 | XAGE1A | X antigen family member 1A | NR_033254.1 | 33.1% | 1_399del;643_733del | |
| 10 | human | 653067 | XAGE1B | X antigen family member 1B | NR_033257.1 | 33.1% | 1_399del;643_733del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 309
- ORF length:
- 243
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GAGCCCCAAA AAGAAGAACC AGCAGCTGAA AGTCGGGATC CTACACCTGG 121 GCAGCAGACA GAAGAAGATC AGGATACAGC TGAGATCCCA GTGCGCGACA TGGAAGGTGA 181 TCTGCAAGAG CTGCATCAGT CAAACACCGG GGATAAATCT GGATTTGGGT TCCGGCGTCA 241 AGGTGAAGAT AATACCTAAA GAGGAACACT GTAAAATGCC AGAAGCAGGT GAAGAGCAAC 301 CACAAGTTTA CCCAACTTTC TTGAACAAAG Ttggcattat aagaaagcat tgcttatcaa 361 tttgttgcaa cgaac