Construct: ORF ccsbBroadEn_02193
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011348.1_s300c1, BRDN0000394924
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- APBA3 (9546)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9546 | APBA3 | amyloid beta precursor prot... | NM_004886.4 | 100% | 100% | |
| 2 | human | 9546 | APBA3 | amyloid beta precursor prot... | XM_006722950.4 | 88.4% | 74% | 1516_1619del;1830_1950del |
| 3 | human | 9546 | APBA3 | amyloid beta precursor prot... | XM_006722951.3 | 51.2% | 39.1% | 0_1ins726;790_893del;1104_1224del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1794
- ORF length:
- 1725
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACTTCCCC ACAATTTCCC GATCCCCTTC GGGGCCTCCA GCCATGGACT 121 TGGAGGGGCC CAGGGACATT CTTGTGCCTT CGGAGGACCT CACCCCTGAC AGCCAGTGGG 181 ACCCTATGCC AGGAGGCCCC GGCAGCCTCA GTCGGATGGA ACTTGATGAG TCAAGCCTTC 241 AGGAGCTGGT GCAGCAGTTT GAAGCTCTGC CAGGCGATCT GGTGGGCCCA TCCCCAGGTG 301 GAGCCCCCTG TCCCCTACAC ATTGCCACAG GCCATGGCCT GGCCTCCCAG GAGATTGCTG 361 ATGCCCACGG GCTCCTGTCT GCCGAAGCTG GCCGGGATGA CCTGCTGGGC CTCTTGCACT 421 GCGAGGAATG CCCGCCTTCC CAGACTGGTC CTGAAGAGCC TCTAGAGCCT GCCCCCCGAC 481 TGTTGCAGCC CCCTGAGGAC CCAGATGAGG ATTCTGACTC CCCAGAATGG GTGGAGGGGG 541 CCTCTGCTGA GCAGGAGGGC AGCAGGAGCT CAAGCAGTTC CCCGGAACCC TGGCTGGAGA 601 CGGTGCCTCT AGTCACACCT GAAGAGCCAC CCGCTGGTGC CCAGAGCCCC GAGACCCTGG 661 CTTCCTACCC TGCCCCCCAG GAGGTGCCTG GTCCCTGTGA CCATGAAGAC CTCCTGGACG 721 GTGTCATATT TGGGGCCAGG TACCTGGGGT CCACCCAGCT GGTGTCGGAA CGGAACCCGC 781 CCACCAGCAC GCGCATGGCC CAGGCCCGGG AGGCCATGGA CCGCGTCAAG GCCCCCGATG 841 GGGAGACCCA GCCCATGACG GAGGTGGACC TGTTCGTCTC CACCAAGAGG ATCAAGGTCT 901 TGACAGCGGA CTCCCAGGAG GCCATGATGG ACCACGCCCT GCATACCATC TCCTACACAG 961 CCGACATCGG CTGCGTGCTG GTGCTGATGG CGCGGCGGCG GCTGGCACGG AGGCCGGCAC 1021 CCCAGGACCA CGGCCGCCGC CTCTACAAGA TGCTCTGCCA CGTATTCTAC GCGGAGGACG 1081 CCCAGCTCAT CGCCCAGGCC ATTGGCCAGG CCTTCGCCGC CGCCTACAGC CAGTTCCTAC 1141 GGGAAAGCGG TATTGACCCC AGCCAGGTGG GCGTGCACCC GAGCCCAGGC GCCTGCCACC 1201 TCCATAATGG GGACCTGGAC CACTTCTCCA ACAGTGACAA CTGCCGGGAG GTGCACCTCG 1261 AGAAGCGGCG AGGGGAGGGC CTGGGCGTGG CCCTGGTGGA GTCGGGCTGG GGCTCCCTGC 1321 TGCCCACAGC CGTCATCGCC AACCTGCTGC ACGGGGGGCC TGCTGAGCGC TCGGGGGCCC 1381 TCAGCATCGG GGACCGCCTG ACCGCCATCA ACGGGACCAG CCTGGTGGGG CTGCCCCTGG 1441 CTGCGTGCCA GGCCGCTGTC CGCGAGACGA AGTCGCAGAC GTCGGTGACA CTCAGCATCG 1501 TCCACTGCCC TCCCGTCACC ACCGCCATCA TCCACCGGCC CCACGCCCGC GAGCAGCTGG 1561 GCTTCTGCGT GGAGGACGGC ATCATCTGCA GCCTCCTCCG TGGTGGCATC GCCGAGCGTG 1621 GGGGCATCCG CGTCGGCCAC CGCATCATTG AGATCAATGG GCAGAGTGTG GTGGCCACGC 1681 CACACGCCCG CATCATCGAG CTGCTCACCG AGGCCTATGG CGAGGTGCAT ATCAAGACGA 1741 TGCCAGCTGC CACATATCGC CTCCTTACAG GCCAGGAGCA GCCCGTGTAC CTGTTGCCAA 1801 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac