Construct: ORF ccsbBroadEn_02457
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003702.1_s300c1, BRDN0000386491
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SYNCRIP (10492)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | NM_001159674.2 | 100% | 100% | |
| 2 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | NM_001159677.2 | 93.7% | 93.7% | 902_1006del |
| 3 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | XM_017010178.2 | 93.7% | 93.7% | 902_1006del |
| 4 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | NM_001159676.1 | 93.5% | 93.5% | 902_1006del;1646_1647insGCA |
| 5 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | XM_005248635.4 | 93.5% | 93.5% | 902_1006del;1646_1647insGCA |
| 6 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | XM_017010179.1 | 93.5% | 93.5% | 902_1006del;1646_1647insGCA |
| 7 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | NM_001159675.1 | 88.3% | 88.2% | (many diffs) |
| 8 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | XM_017010177.1 | 85.8% | 85.9% | 902_1006del;1648_1787delinsC;1812_1813insTGACCTGTTACAA |
| 9 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | XM_017010176.1 | 85.7% | 85.7% | 902_1006del;1647_1788del;1815_1816insTGACCTGTTACAA |
| 10 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | NM_006372.5 | 83.4% | 83.3% | (many diffs) |
| 11 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | XM_005248637.2 | 83.4% | 83.3% | (many diffs) |
| 12 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | NM_001159673.1 | 76.3% | 76.3% | 0_1ins294;608_712del |
| 13 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | XM_017010180.2 | 76.1% | 76.1% | 0_1ins294;608_712del;1352_1353insGCA |
| 14 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | XM_005248636.3 | 67.7% | 67.5% | (many diffs) |
| 15 | human | 10492 | SYNCRIP | synaptotagmin binding cytop... | NM_001253771.2 | 66.7% | 65.3% | 0_1ins430;31_32ins26;446_550del |
| 16 | mouse | 56403 | Syncrip | synaptotagmin binding, cyto... | NM_019796.5 | 90.6% | 93.5% | (many diffs) |
| 17 | mouse | 56403 | Syncrip | synaptotagmin binding, cyto... | NM_001284328.1 | 90.5% | 93.4% | (many diffs) |
| 18 | mouse | 56403 | Syncrip | synaptotagmin binding, cyto... | XM_006511293.3 | 82.9% | 85.6% | (many diffs) |
| 19 | mouse | 56403 | Syncrip | synaptotagmin binding, cyto... | NM_019666.2 | 80.7% | 83.1% | (many diffs) |
| 20 | mouse | 56403 | Syncrip | synaptotagmin binding, cyto... | NM_001311113.1 | 73.5% | 76.1% | (many diffs) |
| 21 | mouse | 56403 | Syncrip | synaptotagmin binding, cyto... | XM_006511294.2 | 65.3% | 67.4% | (many diffs) |
| 22 | mouse | 56403 | Syncrip | synaptotagmin binding, cyto... | XM_017313491.1 | 40.2% | 38% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1647
- ORF length:
- 1581
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TACAGAACAT GTTAATGGAA ATGGTACTGA AGAGCCCATG GATACTACTT 121 CTGCAGTTAT CCATTCAGAA AATTTTCAGA CATTGCTTGA TGCTGGTTTA CCACAGAAAG 181 TTGCTGAAAA ACTAGATGAA ATTTACGTTG CAGGGCTAGT TGCACATAGT GATTTAGATG 241 AAAGAGCTAT TGAAGCTTTA AAAGAATTCA ATGAAGACGG TGCATTGGCA GTTCTTCAAC 301 AGTTTAAAGA CAGTGATCTC TCTCATGTTC AGAACAAAAG TGCCTTTTTA TGTGGAGTCA 361 TGAAGACTTA CAGGCAGAGA GAAAAACAAG GGACCAAAGT AGCAGATTCT AGTAAAGGAC 421 CAGATGAGGC AAAAATTAAG GCACTCTTGG AAAGAACAGG CTACACACTT GATGTGACCA 481 CTGGACAGAG GAAGTATGGA GGACCACCTC CAGATTCCGT TTATTCAGGT CAGCAGCCTT 541 CTGTTGGCAC TGAGATATTT GTGGGAAAGA TCCCAAGAGA TCTATTTGAG GATGAACTTG 601 TTCCATTATT TGAGAAAGCT GGACCTATAT GGGATCTTCG TCTAATGATG GATCCACTCA 661 CTGGTCTCAA TAGAGGTTAT GCGTTTGTCA CTTTTTGTAC AAAAGAAGCA GCTCAGGAGG 721 CTGTTAAACT GTATAATAAT CATGAAATTC GTTCTGGAAA ACATATTGGT GTCTGCATCT 781 CAGTTGCCAA CAATAGGCTT TTTGTGGGCT CTATTCCTAA GAGTAAAACC AAGGAACAGA 841 TTCTTGAAGA ATTTAGCAAA GTAACAGAGG GTCTTACAGA CGTCATTTTA TACCACCAAC 901 CGGATGACAA GAAAAAAAAC AGAGGCTTTT GCTTTCTTGA ATATGAAGAT CACAAAACAG 961 CTGCCCAGGT AAAAGTGCTG TTTGTACGCA ACCTTGCCAA TACTGTAACA GAAGAGATTT 1021 TAGAAAAGGC ATTTAGTCAG TTTGGGAAAC TGGAACGAGT GAAGAAGTTA AAAGATTATG 1081 CGTTCATTCA TTTTGATGAG CGAGATGGTG CTGTCAAGGC TATGGAAGAA ATGAATGGCA 1141 AAGACTTGGA GGGAGAAAAT ATTGAAATTG TTTTTGCCAA GCCACCAGAT CAGAAAAGGA 1201 AAGAAAGAAA AGCTCAGAGG CAAGCAGCAA AAAATCAAAT GTATGACGAT TACTACTATT 1261 ATGGTCCACC TCATATGCCC CCTCCAACAA GAGGTCGAGG GCGTGGAGGT AGAGGTGGTT 1321 ATGGATATCC TCCAGATTAT TATGGATATG AAGATTATTA TGATTATTAT GGTTATGATT 1381 ACCATAACTA TCGTGGTGGA TATGAAGATC CATACTATGG TTATGAAGAT TTTCAAGTTG 1441 GAGCTAGAGG AAGGGGTGGT AGAGGAGCAA GGGGTGCTGC TCCATCCAGA GGTCGTGGGG 1501 CTGCTCCTCC CCGCGGTAGA GCCGGTTATT CACAGAGAGG AGGTCCTGGA TCAGCAAGAG 1561 GCGTTCGAGG TGCGAGAGGA GGTGCCCAAC AACAAAGAGG CCGCGGGCAG GGAAAAGGGG 1621 TCGAGGCCGG TCCTGACCTG TTACAATGCC CAACTTTCTT GTACAAAGTt ggcattataa 1681 gaaagcattg cttatcaatt tgttgcaacg aac