Construct: ORF ccsbBroadEn_02471
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004132.1_s300c1, BRDN0000388672
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CXCL13 (10563)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10563 | CXCL13 | C-X-C motif chemokine ligan... | NM_001371558.1 | 100% | 100% | |
| 2 | human | 10563 | CXCL13 | C-X-C motif chemokine ligan... | NM_006419.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 393
- ORF length:
- 327
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GTTCATCTCG ACATCTCTGC TTCTCATGCT GCTGGTCAGC AGCCTCTCTC 121 CAGTCCAAGG TGTTCTGGAG GTCTATTACA CAAGCTTGAG GTGTAGATGT GTCCAAGAGA 181 GCTCAGTCTT TATCCCTAGA CGCTTCATTG ATCGAATTCA AATCTTGCCC CGTGGGAATG 241 GTTGTCCAAG AAAAGAAATC ATAGTCTGGA AGAAGAACAA GTCAATTGTG TGTGTGGACC 301 CTCAAGCTGA ATGGATACAA AGAATGATGG AAGTATTGAG AAAAAGAAGT TCTTCAACTC 361 TACCAGTTCC AGTGTTTAAG AGAAAGATTC CCTGCCCAAC TTTCTTGTAC AAAGTtggca 421 ttataagaaa gcattgctta tcaatttgtt gcaacgaac