Transcript: Human NM_006419.2

Homo sapiens C-X-C motif chemokine ligand 13 (CXCL13), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
CXCL13 (10563)
Length:
1219
CDS:
79..408

Additional Resources:

NCBI RefSeq record:
NM_006419.2
NBCI Gene record:
CXCL13 (10563)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006419.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000371959 GATTCCCTGATGCTGATATTT pLKO_005 399 CDS 100% 15.000 10.500 N CXCL13 n/a
2 TRCN0000371960 AGGAATCCATGTAGTAGATAT pLKO_005 871 3UTR 100% 13.200 9.240 N CXCL13 n/a
3 TRCN0000372011 AGGTGTTCTGGAGGTCTATTA pLKO_005 141 CDS 100% 13.200 9.240 N CXCL13 n/a
4 TRCN0000377777 TTCACTCACAGCACCCTATAT pLKO_005 577 3UTR 100% 13.200 9.240 N CXCL13 n/a
5 TRCN0000057985 CTGGAAGAAGAACAAGTCAAT pLKO.1 279 CDS 100% 4.950 3.465 N CXCL13 n/a
6 TRCN0000057986 GAATGATGGAAGTATTGAGAA pLKO.1 335 CDS 100% 4.950 3.465 N CXCL13 n/a
7 TRCN0000057983 CGCTTCATTGATCGAATTCAA pLKO.1 214 CDS 100% 0.000 0.000 N CXCL13 n/a
8 TRCN0000057984 CTCTACCAGTTCCAGTGTTTA pLKO.1 371 CDS 100% 13.200 7.920 N CXCL13 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006419.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02471 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02471 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000479228 GGAGTCTAGCTTAAGCTTTCGAAA pLX_317 100% 99.6% 100% V5 318A>G n/a
4 TRCN0000489352 AACCCAGGAACTACATCGAGTCGC pLX_317 100% 100% 100% V5 (not translated due to prior stop codon) n/a
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