Construct: ORF ccsbBroadEn_02472
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005481.1_s300c1, BRDN0000457052
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC34A2 (10568)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10568 | SLC34A2 | solute carrier family 34 me... | NM_001177999.1 | 100% | 100% | |
| 2 | human | 10568 | SLC34A2 | solute carrier family 34 me... | NM_001177998.2 | 99.9% | 99.8% | 1898A>G |
| 3 | human | 10568 | SLC34A2 | solute carrier family 34 me... | NM_006424.3 | 99.8% | 99.5% | 113_115delCAG;1901A>G |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2136
- ORF length:
- 2067
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTCCCTGG CCTGAATTGG GAGATGCCCA GCCCAACCCC GATAAGTACC 121 TCGAAGGGGC CGCAGGTCAG CAGCCCACTG CCCCTGATAA AAGCAAAGAG ACCAACAAAA 181 ATAACACTGA GGCACCTGTA ACCAAGATTG AACTTCTGCC GTCCTACTCC ACGGCTACAC 241 TGATAGATGA GCCCACTGAG GTGGATGACC CCTGGAACCT ACCCACTCTT CAGGACTCGG 301 GGATCAAGTG GTCAGAGAGA GACACCAAAG GGAAGATTCT CTGTTTCTTC CAAGGGATTG 361 GGAGATTGAT TTTACTTCTC GGATTTCTCT ACTTTTTCGT GTGCTCCCTG GATATTCTTA 421 GTAGCGCCTT CCAGCTGGTT GGAGGAAAAA TGGCAGGACA GTTCTTCAGC AACAGCTCTA 481 TTATGTCCAA CCCTTTGTTG GGGCTGGTGA TCGGGGTGCT GGTGACCGTC TTGGTGCAGA 541 GCTCCAGCAC CTCAACGTCC ATCGTTGTCA GCATGGTGTC CTCTTCATTG CTCACTGTTC 601 GGGCTGCCAT CCCCATTATC ATGGGGGCCA ACATTGGAAC GTCAATCACC AACACTATTG 661 TTGCGCTCAT GCAGGTGGGA GATCGGAGTG AGTTCAGAAG AGCTTTTGCA GGAGCCACTG 721 TCCATGACTT CTTCAACTGG CTGTCCGTGT TGGTGCTCTT GCCCGTGGAG GTGGCCACCC 781 ATTACCTCGA GATCATAACC CAGCTTATAG TGGAGAGCTT CCACTTCAAG AATGGAGAAG 841 ATGCCCCAGA TCTTCTGAAA GTCATCACTA AGCCCTTCAC AAAGCTCATT GTCCAGCTGG 901 ATAAAAAAGT TATCAGCCAA ATTGCAATGA ACGATGAAAA AGCGAAAAAC AAGAGTCTTG 961 TCAAGATTTG GTGCAAAACT TTTACCAACA AGACCCAGAT TAACGTCACT GTTCCCTCGA 1021 CTGCTAACTG CACCTCCCCT TCCCTCTGTT GGACGGATGG CATCCAAAAC TGGACCATGA 1081 AGAATGTGAC CTACAAGGAG AACATCGCCA AATGCCAGCA TATCTTTGTG AATTTCCACC 1141 TCCCGGATCT TGCTGTGGGC ACCATCTTGC TCATACTCTC CCTGCTGGTC CTCTGTGGTT 1201 GCCTGATCAT GATTGTCAAG ATCCTGGGCT CTGTGCTCAA GGGGCAGGTC GCCACTGTCA 1261 TCAAGAAGAC CATCAACACT GATTTCCCCT TTCCCTTTGC ATGGTTGACT GGCTACCTGG 1321 CCATCCTCGT CGGGGCAGGC ATGACCTTCA TCGTACAGAG CAGCTCTGTG TTCACGTCGG 1381 CCTTGACCCC CCTGATTGGA ATCGGCGTGA TAACCATTGA GAGGGCTTAT CCACTCACGC 1441 TGGGCTCCAA CATCGGCACC ACCACCACCG CCATCCTGGC CGCCTTAGCC AGCCCTGGCA 1501 ATGCATTGAG GAGTTCACTC CAGATCGCCC TGTGCCACTT TTTCTTCAAC ATCTCCGGCA 1561 TCTTGCTGTG GTACCCGATC CCGTTCACTC GCCTGCCCAT CCGCATGGCC AAGGGGCTGG 1621 GCAACATCTC TGCCAAGTAT CGCTGGTTCG CCGTCTTCTA CCTGATCATC TTCTTCTTCC 1681 TGATCCCGCT GACGGTGTTT GGCCTCTCGC TGGCCGGCTG GCGGGTGCTG GTTGGTGTCG 1741 GGGTTCCCGT CGTCTTCATC ATCATCCTGG TACTGTGCCT CCGACTCCTG CAGTCTCGCT 1801 GCCCACGCGT CCTGCCGAAG AAACTCCAGA ACTGGAACTT CCTGCCGCTG TGGATGCGCT 1861 CGCTGAAGCC CTGGGATGCC GTCGTCTCCA AGTTCACCGG CTGCTTCCAG ATGCGCTGCT 1921 GCTGCTGCTG CCGCGTGTGC TGCCGCGCGT GCTGCTTGCT GTGTGGCTGC CCCAAGTGCT 1981 GCCGCTGCAG CAAGTGCTGC GAGGACTTGG AGGAGGCGCA GGAGGGGCAG GATGTCCCTG 2041 TCAAGGCTCC TGAGACCTTT GATAACATAA CCATTAGCAG AGAGGCTCAG GGTGAGGTCC 2101 CTGCCTCGGA CTCAAAGACC GAATGCACGG CCTTGTTGCC AACTTTCTTG TACAAAGTTG 2161 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac