Construct: ORF ccsbBroadEn_02490
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010121.1_s300c1, BRDN0000385948
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RAD51AP1 (10635)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10635 | RAD51AP1 | RAD51 associated protein 1 | NM_001130862.2 | 100% | 100% | |
| 2 | human | 10635 | RAD51AP1 | RAD51 associated protein 1 | NM_006479.5 | 95.1% | 95.1% | 209_210ins51 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1122
- ORF length:
- 1056
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GCGGCCTGTG AGACATAAGA AACCAGTCAA TTACTCACAG TTTGACCACT 121 CTGACAGTGA TGATGATTTT GTTTCTGCAA CTGTACCTTT AAACAAGAAA TCCAGAACAG 181 CACCAAAGGA GTTAAAACAA GATAAACCAA AACCTAACTT GAACAATCTC CGGAAAGAAG 241 AAATCCCAGT ACAAGAGAAA ACCCCTAAAA AAAGACTCCC TGAAGGTACT TTTAGTATTC 301 CAGCTAGTGC AGTGCCTTGT ACAAAGATGG CTTTAGATGA CAAGCTCTAC CAGAGAGACT 361 TAGAAGTTGC ACTAGCTTTA TCAGTGAAGG AACTTCCAAC AGTCACCACT AATGTGCAGA 421 ACTCTCAAGA TAAAAGCATT GAAAAACATG GCAGTAGTAA AATAGAAACA ATGAATAAGT 481 CTCCTCATAT CTCTAATTGC AGTGTAGCCA GTGATTATTT AGATTTGGAT AAGATTACTG 541 TGGAAGATGA TGTTGGTGGT GTTCAAGGGA AAAGAAAAGC AGCATCTAAA GCTGCAGCAC 601 AGCAGAGGAA GATTCTTCTG GAAGGCAGTG ATGGTGATAG TGCTAATGAC ACTGAACCAG 661 ACTTTGCACC TGGTGAAGAT TCTGAGGATG ATTCTGATTT TTGTGAGAGT GAGGATAATG 721 ACGAAGACTT CTCTATGAGA AAAAGTAAAG TTAAAGAAAT TAAAAAGAAA GAAGTGAAGG 781 TAAAATCCCC AGTAGAAAAG AAAGAGAAGA AATCTAAATC CAAATGTAAT GCTTTGGTGA 841 CTTCGGTGGA CTCTGCTCCA GCTGCCGTCA AATCAGAATC TCAGTCCTTG CCAAAAAAGG 901 TTTCTCTGTC TTCAGATACC ACTAGGAAAC CATTAGAAAT ACGCAGTCCT TCAGCTGAAA 961 GCAAGAAACC TAAATGGGTC CCACCAGCGG CATCTGGAGG TAGCAGAAGT AGCAGCAGCC 1021 CACTGGTGGT AGTGTCTGTG AAGTCTCCCA ATCAGAGTCT CCGCCTTGGC TTGTCCAGAT 1081 TAGCACGAGT TAAACCTTTG CATCCAAATG CCACTAGCAC CTGCCCAACT TTCTTGTACA 1141 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac