Construct: ORF ccsbBroadEn_02491
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005565.1_s300c1, BRDN0000392608
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RAD51AP1 (10635)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10635 | RAD51AP1 | RAD51 associated protein 1 | NM_006479.5 | 100% | 100% | |
| 2 | human | 10635 | RAD51AP1 | RAD51 associated protein 1 | NM_001130862.2 | 95.1% | 95.1% | 210_260del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1071
- ORF length:
- 1005
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT GCGGCCTGTG AGACATAAGA AACCAGTCAA TTACTCACAG TTTGACCACT 121 CTGACAGTGA TGATGATTTT GTTTCTGCAA CTGTACCTTT AAACAAGAAA TCCAGAACAG 181 CACCAAAGGA GTTAAAACAA GATAAACCAA AACCTAACTT GAACAATCTC CGGAAAGAAG 241 AAATCCCAGT ACAAGAGAAA ACCCCTAAAA AAAGGATGGC TTTAGATGAC AAGCTCTACC 301 AGAGAGACTT AGAAGTTGCA CTAGCTTTAT CAGTGAAGGA ACTTCCAACA GTCACCACTA 361 ATGTGCAGAA CTCTCAAGAT AAAAGCATTG AAAAACATGG CAGTAGTAAA ATAGAAACAA 421 TGAATAAGTC TCCTCATATC TCTAATTGCA GTGTAGCCAG TGATTATTTA GATTTGGATA 481 AGATTACTGT GGAAGATGAT GTTGGTGGTG TTCAAGGGAA AAGAAAAGCA GCATCTAAAG 541 CTGCAGCACA GCAGAGGAAG ATTCTTCTGG AAGGCAGTGA TGGTGATAGT GCTAATGACA 601 CTGAACCAGA CTTTGCACCT GGTGAAGATT CTGAGGATGA TTCTGATTTT TGTGAGAGTG 661 AGGATAATGA CGAAGACTTC TCTATGAGAA AAAGTAAAGT TAAAGAAATT AAAAAGAAAG 721 AAGTGAAGGT AAAATCCCCA GTAGAAAAGA AAGAGAAGAA ATCTAAATCC AAATGTAATG 781 CTTTGGTGAC TTCGGTGGAC TCTGCTCCAG CTGCCGTCAA ATCAGAATCT CAGTCCTTGC 841 CAAAAAAGGT TTCTCTGTCT TCAGATACCA CTAGGAAACC ATTAGAAATA CGCAGTCCTT 901 CAGCTGAAAG CAAGAAACCT AAATGGGTCC CACCAGCGGC ATCTGGAGGT AGCAGAAGTA 961 GCAGCAGCCC ACTGGTGGTA GTGTCTGTGA AGTCTCCCAA TCAGAGTCTC CGCCTTGGCT 1021 TGTCCAGATT AGCACGAGTT AAACCTTTGC ATCCAAATGC CACTAGCACC TGCCCAACTT 1081 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac