Construct: ORF ccsbBroadEn_02507
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012847.1_s300c1, BRDN0000397646
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLDN16 (10686)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10686 | CLDN16 | claudin 16 | NM_006580.3 | 100% | 100% | |
| 2 | mouse | 114141 | Cldn16 | claudin 16 | NM_053241.5 | 66.2% | 71.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 981
- ORF length:
- 915
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CTCCAGGACC CCACTGTTGG TTACAGCCTG TTTGTATTAT TCTTACTGCA 121 ACTCAAGACA CCTGCAGCAG GGCGTGAGAA AAAGTAAAAG ACCAGTATTT TCACATTGCC 181 AGGTACCAGA AACACAGAAG ACTGACACCC GCCACTTAAG TGGGGCCAGG GCTGGTGTCT 241 GCCCATGTTG CCATCCTGAT GGGCTGCTTG CCACAATGAG GGATCTTCTT CAATACATCG 301 CTTGCTTCTT TGCCTTTTTC TCTGCTGGGT TTTTGATTGT GGCCACCTGG ACTGACTGTT 361 GGATGGTGAA TGCTGATGAC TCTCTGGAGG TGAGCACAAA ATGCCGAGGC CTCTGGTGGG 421 AATGCGTCAC AAATGCTTTT GATGGGATTC GCACCTGTGA TGAGTACGAT TCCATACTTG 481 CGGAGCATCC CTTGAAGCTG GTGGTAACTC GAGCGTTGAT GATTACTGCA GATATTCTAG 541 CTGGGTTTGG ATTTCTCACC CTGCTCCTTG GTCTTGACTG CGTGAAATTC CTCCCTGATG 601 AGCCGTACAT TAAAGTCCGC ATCTGCTTTG TTGCTGGAGC CACGTTACTA ATAGCAGGTA 661 CCCCAGGAAT CATTGGCTCT GTGTGGTATG CTGTTGATGT GTATGTGGAA CGTTCTACTT 721 TGGTTTTGCA CAATATATTT CTTGGTATCC AATATAAATT TGGTTGGTCC TGTTGGCTCG 781 GAATGGCTGG GTCTCTGGGT TGCTTTTTGG CTGGAGCTGT TCTCACCTGC TGCTTATATC 841 TTTTTAAAGA TGTTGGACCT GAGAGAAACT ATCCTTATTC CTTGAGGAAA GCCTATTCAG 901 CCGCGGGTGT TTCCATGGCC AAGTCATACT CAGCCCCTCG CACAGAGACG GCCAAAATGT 961 ATGCTGTAGA CACAAGGGTG TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 1021 attgcttatc aatttgttgc aacgaac