Construct: ORF ccsbBroadEn_02548
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011934.1_s300c1, BRDN0000387860
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PROKR1 (10887)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10887 | PROKR1 | prokineticin receptor 1 | NM_138964.3 | 100% | 100% | |
| 2 | human | 128674 | PROKR2 | prokineticin receptor 2 | NM_144773.3 | 82.5% | 84.9% | (many diffs) |
| 3 | human | 128674 | PROKR2 | prokineticin receptor 2 | XM_017027646.1 | 82.5% | 84.9% | (many diffs) |
| 4 | mouse | 58182 | Prokr1 | prokineticin receptor 1 | XM_006506433.3 | 58.9% | 60% | (many diffs) |
| 5 | mouse | 246313 | Prokr2 | prokineticin receptor 2 | XM_011239558.2 | 46.8% | 48.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1248
- ORF length:
- 1179
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGACCACC ATGGGGTTCA TGGATGACAA TGCCACCAAC ACTTCCACCA 121 GCTTCCTTTC TGTGCTCAAC CCTCATGGAG CCCATGCCAC TTCCTTCCCA TTCAACTTCA 181 GCTACAGCGA CTATGATATG CCTTTGGATG AAGATGAGGA TGTGACCAAT TCCAGGACGT 241 TCTTTGCTGC CAAGATTGTC ATTGGGATGG CCCTGGTGGG CATCATGCTG GTCTGCGGCA 301 TTGGAAACTT CATCTTTATC GCTGCCCTGG TCCGCTACAA GAAACTGCGC AACCTCACCA 361 ACCTGCTCAT CGCCAACCTG GCCATCTCTG ACTTCCTGGT GGCCATTGTC TGCTGCCCCT 421 TTGAGATGGA CTACTATGTG GTGCGCCAGC TCTCCTGGGA GCACGGCCAC GTCCTGTGCA 481 CCTCTGTCAA CTACCTGCGC ACTGTCTCTC TCTATGTCTC CACCAATGCC CTGCTGGCCA 541 TCGCCATTGA CAGGTATCTG GCTATTGTCC ATCCGCTGAG ACCACGGATG AAGTGCCAAA 601 CAGCCACTGG CCTGATTGCC TTGGTGTGGA CGGTGTCCAT CCTGATCGCC ATCCCTTCCG 661 CCTACTTCAC CACCGAGACG GTCCTCGTCA TTGTCAAGAG CCAGGAAAAG ATCTTCTGCG 721 GCCAGATCTG GCCTGTGGAC CAGCAGCTCT ACTACAAGTC CTACTTCCTC TTTATCTTTG 781 GCATAGAATT CGTGGGCCCC GTGGTCACCA TGACCCTGTG CTATGCCAGG ATCTCCCGGG 841 AGCTCTGGTT CAAGGCGGTC CCTGGATTCC AGACAGAGCA GATCCGCAAG AGGCTGCGCT 901 GCCGCAGGAA GACGGTCCTG GTGCTCATGT GCATCCTCAC CGCCTACGTG CTATGCTGGG 961 CGCCCTTCTA CGGCTTCACC ATCGTGCGCG ACTTCTTCCC CACCGTGTTT GTGAAGGAGA 1021 AGCACTACCT CACTGCCTTC TACATCGTCG AGTGCATCGC CATGAGCAAC AGCATGATCA 1081 ACACTCTGTG CTTCGTGACC GTCAAGAACG ACACCGTCAA GTACTTCAAA AAGATCATGT 1141 TGCTCCACTG GAAGGCTTCT TACAATGGCG GTAAGTCCAG TGCAGACCTG GACCTCAAGA 1201 CAATTGGGAT GCCTGCCACC GAAGAGGTGG ACTGCATCAG ACTAAAATTG CCAACTTTCT 1261 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac