Construct: ORF ccsbBroadEn_02548

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011934.1_s300c1, BRDN0000387860
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PROKR1 (10887)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10887 PROKR1 prokineticin receptor 1 NM_138964.3 100% 100%
2 human 128674 PROKR2 prokineticin receptor 2 NM_144773.3 82.5% 84.9% (many diffs)
3 human 128674 PROKR2 prokineticin receptor 2 XM_017027646.1 82.5% 84.9% (many diffs)
4 mouse 58182 Prokr1 prokineticin receptor 1 XM_006506433.3 58.9% 60% (many diffs)
5 mouse 246313 Prokr2 prokineticin receptor 2 XM_011239558.2 46.8% 48.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1248
ORF length:
1179
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAGACCACC ATGGGGTTCA TGGATGACAA TGCCACCAAC ACTTCCACCA
121GCTTCCTTTC TGTGCTCAAC CCTCATGGAG CCCATGCCAC TTCCTTCCCA TTCAACTTCA
181GCTACAGCGA CTATGATATG CCTTTGGATG AAGATGAGGA TGTGACCAAT TCCAGGACGT
241TCTTTGCTGC CAAGATTGTC ATTGGGATGG CCCTGGTGGG CATCATGCTG GTCTGCGGCA
301TTGGAAACTT CATCTTTATC GCTGCCCTGG TCCGCTACAA GAAACTGCGC AACCTCACCA
361ACCTGCTCAT CGCCAACCTG GCCATCTCTG ACTTCCTGGT GGCCATTGTC TGCTGCCCCT
421TTGAGATGGA CTACTATGTG GTGCGCCAGC TCTCCTGGGA GCACGGCCAC GTCCTGTGCA
481CCTCTGTCAA CTACCTGCGC ACTGTCTCTC TCTATGTCTC CACCAATGCC CTGCTGGCCA
541TCGCCATTGA CAGGTATCTG GCTATTGTCC ATCCGCTGAG ACCACGGATG AAGTGCCAAA
601CAGCCACTGG CCTGATTGCC TTGGTGTGGA CGGTGTCCAT CCTGATCGCC ATCCCTTCCG
661CCTACTTCAC CACCGAGACG GTCCTCGTCA TTGTCAAGAG CCAGGAAAAG ATCTTCTGCG
721GCCAGATCTG GCCTGTGGAC CAGCAGCTCT ACTACAAGTC CTACTTCCTC TTTATCTTTG
781GCATAGAATT CGTGGGCCCC GTGGTCACCA TGACCCTGTG CTATGCCAGG ATCTCCCGGG
841AGCTCTGGTT CAAGGCGGTC CCTGGATTCC AGACAGAGCA GATCCGCAAG AGGCTGCGCT
901GCCGCAGGAA GACGGTCCTG GTGCTCATGT GCATCCTCAC CGCCTACGTG CTATGCTGGG
961CGCCCTTCTA CGGCTTCACC ATCGTGCGCG ACTTCTTCCC CACCGTGTTT GTGAAGGAGA
1021AGCACTACCT CACTGCCTTC TACATCGTCG AGTGCATCGC CATGAGCAAC AGCATGATCA
1081ACACTCTGTG CTTCGTGACC GTCAAGAACG ACACCGTCAA GTACTTCAAA AAGATCATGT
1141TGCTCCACTG GAAGGCTTCT TACAATGGCG GTAAGTCCAG TGCAGACCTG GACCTCAAGA
1201CAATTGGGAT GCCTGCCACC GAAGAGGTGG ACTGCATCAG ACTAAAATTG CCAACTTTCT
1261TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)