Construct: ORF ccsbBroadEn_02554
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009521.1_s300c1, BRDN0000393281
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRAFD1 (10906)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10906 | TRAFD1 | TRAF-type zinc finger domai... | NM_001143906.1 | 100% | 100% | |
| 2 | human | 10906 | TRAFD1 | TRAF-type zinc finger domai... | NM_006700.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1812
- ORF length:
- 1746
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TGAATTTCTA GATGACCAGG AAACTCGACT GTGTGACAAC TGCAAAAAAG 121 AAATTCCTGT GTTTAACTTT ACCATCCATG AGATCCACTG TCAAAGGAAC ATTGGTATGT 181 GTCCTACCTG TAAGGAACCA TTTCCCAAAT CTGACATGGA GACTCACATG GCTGCAGAAC 241 ACTGTCAGGT GACCTGCAAA TGTAACAAGA AGTTGGAGAA GAGGCTGTTA AAGAAGCATG 301 AGGAGACTGA GTGCCCTTTG CGGCTTGCTG TCTGCCAGCA CTGTGATTTA GAACTTTCCA 361 TTCTCAAACT GAAGGAACAT GAAGATTATT GTGGTGCCCG GACGGAACTA TGTGGCAACT 421 GTGGTCGCAA TGTCCTTGTG AAAGATCTGA AGACTCACCC TGAAGTTTGT GGGAGAGAGG 481 GGGAGGAAAA GAGAAATGAG GTTGCCATAC CTCCTAATGC ATATGATGAA TCTTGGGGTC 541 AGGATGGAAT CTGGATTGCA TCCCAACTCC TCAGACAAAT TGAGGCTCTG GACCCACCCA 601 TGAGGCTGCC GCGAAGGCCC CTGAGAGCCT TTGAATCAGA TGTTTTCCAC AATAGAACTA 661 CCAACCAAAG GAACATTACA GCCCAGGTTT CAATTCAGAA TAATCTGTTT GAAGAACAAG 721 AGAGGCAGGA AAGGAATAGA GGCCAACAGC CCCCCAAAGA GGGTGGTGAA GAGAGTGCAA 781 ACTTGGACTT CATGTTGGCC CTAAGTCTGC AAAATGAAGG CCAAGCCTCC AGTGTGGCAG 841 AGCAGGACTT CTGGAGGGCC GTATGTGAGG CCGACCAGTC TCATGGCGGT CCCAGGTCTC 901 TCAGTGACAT AAAGGGTGCA GCTGACGAGA TCATGTTGCC TTGTGAATTT TGTGAGGAGC 961 TCTACCCAGA GGAACTGCTG ATTGACCATC AGACAAGCTG TAACCCTTCA CGTGCCTTAC 1021 CTTCACTCAA TACTGGCAGC TCTTCCCCCA GAGGGGTGGA GGAACCTGAT GTCATCTTCC 1081 AGAACTTCTT GCAACAGGCT GCAAGTAACC AGTTAGACTC TTTGATGGGC CTGAGCAATT 1141 CACACCCTGT GGAGGAGAGC ATCATTATCC CATGTGAATT CTGTGGGGTA CAGCTGGAAG 1201 AGGAGGTGCT GTTCCATCAC CAGGACCAGT GTGACCAACG CCCAGCCACT GCAACCAACC 1261 ATGTGACAGA GGGGATTCCT AGACTGGATT CCCAGCCTCA AGAGACCTCA CCAGAGCTGC 1321 CCAGGAGGCG TGTCAGACAC CAGGGAGACC TGTCTTCTGG TTACCTGGAT GATACTAAGC 1381 AGGAAACAGC TAATGGGCCC ACCTCCTGTC TGCCTCCCAG CCGACCCATT AACAATATGA 1441 CAGCTACCTA TAACCAGCTA TCGAGATCAA CATCAGGCCC CAGACCTGGG TGCCAGCCCA 1501 GCTCTCCTTG TGTGCCGAAG CTCAGCAACT CAGACAGCCA GGACATCCAG GGGCGGAATC 1561 GAGACAGCCA GAATGGGGCC ATAGCCCCTG GGCACGTTTC AGTGATTCGC CCTCCTCAAA 1621 ATCTCTACCC AGAAAACATT GTGCCCTCTT TCTCCCCTGG GCCTTCAGGG AGATACGGAG 1681 CTAGTGGTAG GAGTGAAGGT GGCAGGAATT CCCGGGTCAC CCCTGCAGCT GCCAACTACC 1741 GCAGCAGAAC TGCAAAGGCA AAGCCTTCCA AGCAACAGGG AGCTGGGGAT GCAGAAGAGG 1801 AAGAGGAGGA GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1861 caatttgttg caacgaac