Construct: ORF ccsbBroadEn_02572
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004508.1_s300c1, BRDN0000392804
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SERINC3 (10955)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10955 | SERINC3 | serine incorporator 3 | NM_006811.4 | 100% | 100% | |
| 2 | human | 10955 | SERINC3 | serine incorporator 3 | NM_198941.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1485
- ORF length:
- 1419
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GGCTGTGCTG GGTGTCTTCT CCCTCGCCAG CTGGGTTCCA TGCCTCTGCA 121 GCGGTGCCTC ATGTTTGCTG TGTAGTTGCT GTCCTAACAG TAAGAATTCC ACGGTGACTC 181 GCCTCATTTA TGCTTTCATT CTCCTCCTGA GCACTGTCGT ATCCTATATC ATGCAGAGAA 241 AAGAGATGGA AACTTACTTG AAGAAGATTC CTGGATTTTG TGAAGGGGGA TTTAAAATCC 301 ATGAGGCTGA TATAAATGCA GATAAAGATT GTGATGTGCT GGTTGGTTAT AAAGCTGTGT 361 ATCGGATCAG CTTTGCCATG GCCATCTTTT TCTTTGTCTT TTCTCTGCTC ATGTTCAAAG 421 TAAAAACAAG TAAAGATCTC CGAGCGGCAG TACACAATGG GTTTTGGTTC TTCAAAATTG 481 CTGCCCTTAT TGGAATCATG GTTGGCTCTT TCTACATCCC TGGGGGCTAT TTCAGCTCAG 541 TCTGGTTTGT TGTTGGCATG ATAGGGGCCG CCCTCTTCAT CCTCATTCAG CTGGTGCTGC 601 TGGTAGATTT TGCTCATTCT TGGAATGAAT CATGGGTAAA TCGAATGGAA GAAGGAAACC 661 CAAGGTTGTG GTATGCTGCT TTACTGTCTT TCACAAGCGC CTTTTATATC CTGTCAATCA 721 TCTGTGTCGG GCTGCTCTAT ACATATTACA CCAAACCAGA TGGCTGCACA GAAAACAAGT 781 TCTTCATCAG TATTAACCTG ATCCTTTGCG TTGTGGCTTC TATTATATCG ATCCACCCAA 841 AAATTCAGGA ACACCAGCCT CGCTCCGGCC TCTTGCAGTC CTCCCTCATC ACCCTCTACA 901 CTATGTACCT CACCTGGTCA GCCATGTCCA ATGAACCTGA TCGTTCCTGC AATCCCAACC 961 TGATGAGCTT TATTACACGC ATAACTGCAC CAACCCTGGC TCCTGGAAAT TCAACTGCTG 1021 TGGTCCCTAC CCCTACTCCA CCATCAAAGA GTGGGTCTTT ACTGGATTCA GATAATTTTA 1081 TTGGACTGTT TGTCTTTGTT CTCTGCCTCT TGTATTCTAG CATCCGCACT TCCACTAATA 1141 GCCAAGTAGA CAAGCTGACC CTGTCAGGGA GTGACAGCGT CATCCTTGGT GATACAACTA 1201 CCAGTGGTGC CAGTGATGAA GAAGATGGAC AGCCTCGGCG GGCTGTGGAC AACGAGAAAG 1261 AGGGAGTGCA GTATAGCTAC TCCTTATTCC ACCTCATGCT CTGCTTGGCT TCCTTGTACA 1321 TCATGATGAC CCTGACCAGC TGGTACAGCC CTGATGCAAA GTTTCAGAGC ATGACCAGCA 1381 AGTGGCCAGC TGTGTGGGTC AAGATCAGCT CCAGCTGGGT CTGCCTCCTG CTTTACGTCT 1441 GGACCCTTGT GGCTCCACTT GTCCTCACCA GTCGGGACTT CAGCTGCCCA ACTTTCTTGT 1501 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c