Transcript: Human NM_198941.2

Homo sapiens serine incorporator 3 (SERINC3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-02-26
Taxon:
Homo sapiens (human)
Gene:
SERINC3 (10955)
Length:
1770
CDS:
166..1587

Additional Resources:

NCBI RefSeq record:
NM_198941.2
NBCI Gene record:
SERINC3 (10955)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_198941.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000115948 CCCAACCTGATGAGCTTTATT pLKO.1 1054 CDS 100% 15.000 12.000 N SERINC3 n/a
2 TRCN0000286373 CCCAACCTGATGAGCTTTATT pLKO_005 1054 CDS 100% 15.000 12.000 N SERINC3 n/a
3 TRCN0000115950 GCTCTATACATATTACACCAA pLKO.1 834 CDS 100% 2.640 2.112 N SERINC3 n/a
4 TRCN0000286430 GCTCTATACATATTACACCAA pLKO_005 834 CDS 100% 2.640 2.112 N SERINC3 n/a
5 TRCN0000115949 CCAACCTGATGAGCTTTATTA pLKO.1 1055 CDS 100% 15.000 10.500 N SERINC3 n/a
6 TRCN0000293865 GAGCACTGTCGTATCCTATAT pLKO_005 309 CDS 100% 13.200 9.240 N SERINC3 n/a
7 TRCN0000293864 ACACCACTGGAACTCACAAAG pLKO_005 1605 3UTR 100% 10.800 7.560 N SERINC3 n/a
8 TRCN0000115951 GCGTCATCCTTGGTGATACAA pLKO.1 1277 CDS 100% 5.625 3.938 N SERINC3 n/a
9 TRCN0000115947 GCTGTGTAGTTGCTGTCCTAA pLKO.1 237 CDS 100% 4.950 3.465 N SERINC3 n/a
10 TRCN0000298204 GCTGTGTAGTTGCTGTCCTAA pLKO_005 237 CDS 100% 4.950 3.465 N SERINC3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_198941.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02572 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02572 pLX_304 0% 100% 100% V5 n/a
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