Construct: ORF ccsbBroadEn_02591
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003955.1_s300c1, BRDN0000393819
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC27A2 (11001)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11001 | SLC27A2 | solute carrier family 27 me... | NM_001159629.1 | 100% | 100% | |
| 2 | human | 11001 | SLC27A2 | solute carrier family 27 me... | NM_003645.4 | 91.4% | 91.4% | 688_846del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1767
- ORF length:
- 1701
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT TTCCGCCATC TACACAGTCC TGGCGGGACT GCTGTTCCTG CCGCTCCTGG 121 TGAACCTCTG CTGCCCATAC TTCTTCCAGG ACATAGGCTA CTTCTTGAAG GTGGCCGCCG 181 TGGGCCGGAG GGTGCGCAGC TACGGGAAGC GGCGGCCGGC GCGCACCATC CTGCGGGCGT 241 TCCTGGAGAA AGCGCGCCAG ACGCCACACA AGCCTTTTCT GCTCTTCCGC GACGAGACTC 301 TCACCTACGC GCAGGTGGAC CGGCGCAGCA ATCAAGTGGC CCGGGCGCTG CACGACCACC 361 TCGGCCTGCG CCAGGGAGAC TGCGTGGCGC TCCTTATGGG TAACGAGCCG GCCTACGTGT 421 GGCTGTGGCT GGGGCTGGTG AAGCTGGGCT GTGCCATGGC GTGCCTCAAT TACAACATCC 481 GCGCGAAGTC CCTGCTGCAC TGCTTCCAGT GCTGCGGGGC GAAGGTGCTG CTGGTGTCGC 541 CAGAACTACA AGCAGCTGTC GAAGAGATAC TGCCAAGCCT TAAAAAAGAT GATGTGTCCA 601 TCTATTATGT GAGCAGAACT TCTAACACAG ATGGGATTGA CTCTTTCCTG GACAAAGTGG 661 ATGAAGTATC AACTGAACCT ATCCCAGAGT CATGGAGGTC TGAAGTCACT TTTTCCACTC 721 CTGCCTTATA CATTTATACT TCTGGAACCA CAGGTGCTAC TCTTGCCTTG CGGACTAAAT 781 TTTCAGCCAG CCAGTTTTGG GATGACTGCA GAAAATACAA CGTCACTGTC ATTCAGTATA 841 TCGGTGAACT GCTTCGGTAT TTATGCAACT CACCACAGAA ACCAAATGAC CGTGATCATA 901 AAGTGAGACT GGCACTGGGA AATGGCTTAC GAGGAGATGT GTGGAGACAA TTTGTCAAGA 961 GATTTGGGGA CATATGCATC TATGAGTTCT ATGCTGCCAC TGAAGGCAAT ATTGGATTTA 1021 TGAATTATGC GAGAAAAGTT GGTGCTGTTG GAAGAGTAAA CTACCTACAG AAAAAAATCA 1081 TAACTTATGA CCTGATTAAA TATGATGTGG AGAAAGATGA ACCTGTCCGT GATGAAAATG 1141 GATATTGCGT CAGAGTTCCC AAAGGTGAAG TTGGACTTCT GGTTTGCAAA ATCACACAAC 1201 TTACACCATT TAATGGCTAT GCTGGAGCAA AGGCTCAGAC AGAGAAGAAA AAACTGAGAG 1261 ATGTCTTTAA GAAAGGAGAC CTCTATTTCA ACAGTGGAGA TCTCTTAATG GTTGACCATG 1321 AAAATTTCAT CTATTTCCAC GACAGAGTTG GAGATACATT CCGGTGGAAA GGGGAAAATG 1381 TGGCCACCAC TGAAGTTGCT GATACAGTTG GACTGGTTGA TTTTGTCCAA GAAGTAAATG 1441 TTTATGGAGT GCATGTGCCA GATCATGAGG GTCGCATTGG CATGGCCTCC ATCAAAATGA 1501 AAGAAAACCA TGAATTTGAT GGAAAGAAAC TCTTTCAGCA CATTGCTGAT TACCTACCTA 1561 GTTATGCAAG GCCCCGGTTT CTAAGAATAC AGGACACCAT TGAGATCACT GGAACTTTTA 1621 AACACCGCAA AATGACCCTG GTGGAGGAGG GCTTTAACCC TGCTGTCATC AAAGATGCCT 1681 TGTATTTCTT GGATGACACA GCAAAAATGT ATGTGCCTAT GACTGAGGAC ATCTATAATG 1741 CCATAAGTGC TAAAACCCTG AAACTCTGCC CAACTTTCTT GTACAAAGTt ggcattataa 1801 gaaagcattg cttatcaatt tgttgcaacg aac