Construct: ORF ccsbBroadEn_02607

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002743.1_s300c1, BRDN0000385460
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WWP1 (11059)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11059 WWP1 WW domain containing E3 ubi... NM_007013.4 100% 100%
2 human 11059 WWP1 WW domain containing E3 ubi... XM_005250760.4 100% 100%
3 human 11059 WWP1 WW domain containing E3 ubi... XM_005250761.4 99.8% 99.7% 472_473insTAG
4 human 11059 WWP1 WW domain containing E3 ubi... XM_017012993.1 99.8% 99.7% 472_473insTAG
5 human 11059 WWP1 WW domain containing E3 ubi... XM_017012994.2 97.3% 97.3% 1674_1675ins72
6 human 11059 WWP1 WW domain containing E3 ubi... XM_024447056.1 97.3% 97.3% 1674_1675ins72
7 human 11059 WWP1 WW domain containing E3 ubi... XM_017012995.2 80.5% 80.4% 0_1ins537;2T>G
8 human 11059 WWP1 WW domain containing E3 ubi... XM_017012996.1 80.5% 80.4% 0_1ins537;2T>G
9 human 11059 WWP1 WW domain containing E3 ubi... XM_017012997.2 77.9% 77.8% 0_1ins537;2T>G;1137_1138ins72
10 human 11059 WWP1 WW domain containing E3 ubi... XR_001745464.2 61.3% 1_267del;1944_1954del;3045_4508del
11 mouse 107568 Wwp1 WW domain containing E3 ubi... NM_177327.5 89.9% 90.5% (many diffs)
12 mouse 107568 Wwp1 WW domain containing E3 ubi... XM_006537545.3 83.2% 83.1% (many diffs)
13 mouse 107568 Wwp1 WW domain containing E3 ubi... NM_001276292.1 77.2% 73% (many diffs)
14 mouse 107568 Wwp1 WW domain containing E3 ubi... XM_006537546.3 66% 67.3% (many diffs)
15 mouse 107568 Wwp1 WW domain containing E3 ubi... NR_074090.1 37% (many diffs)
16 mouse 107568 Wwp1 WW domain containing E3 ubi... NR_074089.1 34.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2832
ORF length:
2766
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CACTGCTTCA CCAAGGTCTG ATACTAGTAA TAACCACAGT GGAAGGTTGC
121AGTTACAGGT AACTGTTTCT AGTGCCAAAC TTAAAAGAAA AAAGAACTGG TTCGGAACAG
181CAATATATAC AGAAGTAGTT GTAGATGGAG AAATTACGAA AACAGCAAAA TCCAGTAGTT
241CTTCTAATCC AAAATGGGAT GAACAGCTAA CTGTAAATGT TACGCCACAG ACTACATTGG
301AATTTCAAGT TTGGAGCCAT CGCACTTTAA AAGCAGATGC TTTATTAGGA AAAGCAACGA
361TAGATTTGAA ACAAGCTCTG TTGATACACA ATAGAAAATT GGAAAGAGTG AAAGAACAAT
421TAAAACTTTC CTTGGAAAAC AAGAATGGCA TAGCACAAAC TGGTGAATTG ACAGTTGTGC
481TTGATGGATT GGTGATTGAG CAAGAAAATA TAACAAACTG CAGCTCATCT CCAACCATAG
541AAATACAGGA AAATGGTGAT GCCTTACATG AAAATGGAGA GCCTTCAGCA AGGACAACTG
601CCAGGTTGGC TGTTGAAGGC ACGAATGGAA TAGATAATCA TGTACCTACA AGCACTCTAG
661TCCAAAACTC ATGCTGCTCG TATGTAGTTA ATGGAGACAA CACACCTTCA TCTCCGTCTC
721AGGTTGCTGC CAGACCCAAA AATACACCAG CTCCAAAACC ACTCGCATCT GAGCCTGCCG
781ATGACACTGT TAATGGAGAA TCATCCTCAT TTGCACCAAC TGATAATGCG TCTGTCACGG
841GTACTCCAGT AGTGTCTGAA GAAAATGCCT TGTCTCCAAA TTGCACTAGT ACTACTGTTG
901AAGATCCTCC AGTTCAAGAA ATACTGACTT CCTCAGAAAA CAATGAATGT ATTCCTTCTA
961CCAGTGCAGA ATTGGAATCT GAAGCTAGAA GTATATTAGA GCCTGACACC TCTAATTCTA
1021GAAGTAGTTC TGCTTTTGAA GCAGCCAAAT CAAGACAGCC AGATGGGTGT ATGGATCCTG
1081TACGGCAGCA GTCTGGGAAT GCCAACACAG AAACCTTGCC ATCAGGGTGG GAACAAAGAA
1141AAGATCCTCA TGGTAGAACC TATTATGTGG ATCATAATAC TCGAACTACC ACATGGGAGA
1201GACCACAACC TTTACCTCCA GGTTGGGAAA GAAGAGTTGA TGATCGTAGA AGAGTTTATT
1261ATGTGGATCA TAACACCAGA ACAACAACGT GGCAGCGGCC TACCATGGAA TCTGTCCGAA
1321ATTTTGAACA GTGGCAATCT CAGCGGAACC AATTGCAGGG AGCTATGCAA CAGTTTAACC
1381AACGATACCT CTATTCGGCT TCAATGTTAG CTGCAGAAAA TGACCCTTAT GGACCTTTGC
1441CACCAGGCTG GGAAAAAAGA GTGGATTCAA CAGACAGGGT TTACTTTGTG AATCATAACA
1501CAAAAACAAC CCAGTGGGAA GATCCAAGAA CTCAAGGCTT ACAGAATGAA GAACCCCTGC
1561CAGAAGGCTG GGAAATTAGA TATACTCGTG AAGGTGTAAG GTACTTTGTT GATCATAACA
1621CAAGAACAAC AACATTCAAA GATCCTCGCA ATGGGAAGTC ATCTGTAACT AAAGGTGGTC
1681CACAAATTGC TTATGAACGC GGCTTTAGGT GGAAGCTTGC TCACTTCCGT TATTTGTGCC
1741AGTCTAATGC ACTACCTAGT CATGTAAAGA TCAATGTGTC CCGGCAGACA TTGTTTGAAG
1801ATTCCTTCCA ACAGATTATG GCATTAAAAC CCTATGACTT GAGGAGGCGC TTATATGTAA
1861TATTTAGAGG AGAAGAAGGA CTTGATTATG GTGGCCTAGC GAGAGAATGG TTTTTCTTGC
1921TTTCACATGA AGTTTTGAAC CCAATGTATT GCTTATTTGA GTATGCGGGC AAGAACAACT
1981ATTGTCTGCA GATAAATCCA GCATCAACCA TTAATCCAGA CCATCTTTCA TACTTCTGTT
2041TCATTGGTCG TTTTATTGCC ATGGCACTAT TTCATGGAAA GTTTATCGAT ACTGGTTTCT
2101CTTTACCATT CTACAAGCGT ATGTTAAGTA AAAAACTTAC TATTAAGGAT TTGGAATCTA
2161TTGATACTGA ATTTTATAAC TCCCTTATCT GGATAAGAGA TAACAACATT GAAGAATGTG
2221GCTTAGAAAT GTACTTTTCT GTTGACATGG AGATTTTGGG AAAAGTTACT TCACATGACC
2281TGAAGTTGGG AGGTTCCAAT ATTCTGGTGA CTGAGGAGAA CAAAGATGAA TATATTGGTT
2341TAATGACAGA ATGGCGTTTT TCTCGAGGAG TACAAGAACA GACCAAAGCT TTCCTTGATG
2401GTTTTAATGA AGTTGTTCCT CTTCAGTGGC TACAGTACTT CGATGAAAAA GAATTAGAGG
2461TTATGTTGTG TGGCATGCAG GAGGTTGACT TGGCAGATTG GCAGAGAAAT ACTGTTTATC
2521GACATTATAC AAGAAACAGC AAGCAAATCA TTTGGTTTTG GCAGTTTGTG AAAGAGACAG
2581ACAATGAAGT AAGAATGCGA CTATTGCAGT TCGTCACTGG AACCTGCCGT TTACCTCTAG
2641GAGGATTTGC TGAGCTCATG GGAAGTAATG GGCCTCAAAA GTTTTGCATT GAAAAAGTTG
2701GCAAAGACAC TTGGTTACCA AGAAGCCATA CATGTTTTAA TCGCTTGGAT CTACCACCAT
2761ATAAGAGTTA TGAACAACTA AAGGAAAAAC TTCTTTTTGC AATAGAAGAG ACAGAGGGAT
2821TTGGACAAGA ATGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
2881caatttgttg caacgaac

Download FASTA (ORF) (Full)