Construct: ORF ccsbBroadEn_02642
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011078.1_s300c1, BRDN0000394330
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- INSL6 (11172)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11172 | INSL6 | insulin like 6 | NM_007179.3 | 100% | 100% | |
| 2 | human | 11172 | INSL6 | insulin like 6 | XM_011517702.3 | 58.9% | 58.6% | 377delT;378_379ins262 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 708
- ORF length:
- 639
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCGCGGCTC CTCCGCTTGT CCCTGCTGTG GCTTGGACTC CTGCTGGTTC 121 GGTTTTCTCG TGAACTGAGC GACATCAGCA GTGCCAGGAA GCTGTGCGGC AGGTACTTGG 181 TGAAAGAAAT AGAAAAACTC TGCGGCCATG CCAACTGGAG CCAGTTCCGT TTCGAGGAGG 241 AAACCCCTTT CTCACGGTTG ATTGCACAGG CCTCGGAGAA GGTCGAAGCC TACAGCCCAT 301 ACCAGTTCGA AAGCCCGCAA ACCGCTTCCC CGGCCCGGGG AAGAGGCACA AACCCAGTGT 361 CTACTTCTTG GGAAGAAGCA GTAAACAGTT GGGAAATGCA GTCACTACCT GAGTATAAGG 421 ATAAAAAGGG ATATTCACCC CTTGGTAAGA CAAGAGAATT TTCTTCATCA CATAATATCA 481 ATGTATATAT TCATGAGAAT GCAAAATTTC AGAAGAAACG TAGAAACAAA ATTAAAACCT 541 TAAGCAATTT GTTTTGGGGG CATCATCCCC AAAGAAAACG CAGAGGATAT TCAGAAAAGT 601 GTTGTCTTAC AGGATGTACA AAAGAAGAAC TTAGCATTGC ATGTCTTCCA TATATTGATT 661 TTAAAAGGCT AAAGGAAAAA AGATCATCAC TTGTAACTAA GATATACTTG CCAACTTTCT 721 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac