Construct: ORF ccsbBroadEn_02685

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018485.1_s300c1, BRDN0000389329
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IKZF2 (22807)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22807 IKZF2 IKAROS family zinc finger 2 NM_001079526.2 100% 100%
2 human 22807 IKZF2 IKAROS family zinc finger 2 NM_001371275.1 100% 100%
3 human 22807 IKZF2 IKAROS family zinc finger 2 NM_001371276.1 100% 100%
4 human 22807 IKZF2 IKAROS family zinc finger 2 XM_005246386.5 98.8% 98.8% 1_18del
5 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510815.3 98.6% 98.4% 1_18del;53_55delCAG
6 human 22807 IKZF2 IKAROS family zinc finger 2 NM_001371274.1 95% 95% 327_404del
7 human 22807 IKZF2 IKAROS family zinc finger 2 NM_016260.3 95% 95% 327_404del
8 human 22807 IKZF2 IKAROS family zinc finger 2 XM_005246384.5 95% 95% 327_404del
9 human 22807 IKZF2 IKAROS family zinc finger 2 XM_005246385.4 95% 95% 327_404del
10 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510807.3 94.8% 94.6% 35_37delCAG;330_407del
11 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510808.3 94.8% 94.6% 35_37delCAG;330_407del
12 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510809.3 94.8% 94.6% 35_37delCAG;330_407del
13 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510810.3 94.8% 94.6% 35_37delCAG;330_407del
14 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510811.3 94.8% 94.6% 35_37delCAG;330_407del
15 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510812.3 94.8% 94.6% 35_37delCAG;330_407del
16 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510802.3 93.8% 93.6% 1_18del;53_55delCAG;348_425del
17 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510803.3 93.8% 93.6% 1_18del;53_55delCAG;348_425del
18 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510804.3 93.8% 93.6% 1_18del;53_55delCAG;348_425del
19 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510805.3 93.8% 93.6% 1_18del;53_55delCAG;348_425del
20 human 22807 IKZF2 IKAROS family zinc finger 2 NM_001371277.1 90.2% 90.2% 135_136insAGC;630_631ins144
21 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510819.3 89.3% 89.3% 1_18del;651_652ins144
22 human 22807 IKZF2 IKAROS family zinc finger 2 XM_017003592.2 89.1% 88.9% 1_18del;53_55delCAG;654_655ins144
23 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510816.3 88.5% 86.8% (many diffs)
24 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510818.3 84.9% 84.9% 0_1ins159;168_245del
25 human 22807 IKZF2 IKAROS family zinc finger 2 XM_017003591.2 84.9% 84.9% 0_1ins159;168_245del
26 human 22807 IKZF2 IKAROS family zinc finger 2 XM_011510817.3 84.8% 84.6% (many diffs)
27 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495968.2 91.3% 93.4% (many diffs)
28 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_011238509.2 91.1% 93.1% (many diffs)
29 mouse 22779 Ikzf2 IKAROS family zinc finger 2 NM_011770.4 90.8% 92.9% (many diffs)
30 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495966.3 90.8% 92.9% (many diffs)
31 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495967.3 90.8% 92.9% (many diffs)
32 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_017320399.1 90.8% 92.9% (many diffs)
33 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495962.3 90.6% 92.5% (many diffs)
34 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495963.3 90.6% 92.5% (many diffs)
35 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495964.2 90.6% 92.5% (many diffs)
36 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495965.3 90.6% 92.5% (many diffs)
37 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_011238508.2 90.6% 92.5% (many diffs)
38 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495961.2 89.7% 91.9% (many diffs)
39 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_011238505.2 89.6% 91.5% (many diffs)
40 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_011238506.2 89.6% 91.5% (many diffs)
41 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_006495959.2 87% 89% (many diffs)
42 mouse 22779 Ikzf2 IKAROS family zinc finger 2 XM_011238504.2 86.8% 88.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1566
ORF length:
1500
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AACAGAGGCT ATTGATGGCT ATATAACGTG TGACAATGAG CTTTCACCCG
121AAAGGGAGCA CTCCAATATG GCAATTGACC TCACCTCAAG CACACCCAAT GGACAGCATG
181CCTCACCAAG TCACATGACA AGCACAAATT CAGTAAAGCT AGAAATGCAG AGTGATGAAG
241AGTGTGACAG GAAACCCCTG AGCCGTGAAG ATGAGATCAG GGGCCATGAT GAGGGTAGCA
301GCCTAGAAGA ACCCCTAATT GAGAGCAGCG AGGTGGCTGA CAACAGGAAA GTCCAGGAGC
361TTCAAGGCGA GGGAGGAATC CGGCTTCCGA ATGGTGAACG CCCCTTCCAC TGTAACCAGT
421GTGGAGCTTC TTTTACTCAG AAGGGCAACC TTCTGAGACA CATAAAGTTA CACTCTGGAG
481AGAAGCCGTT CAAATGTCCT TTCTGTAGCT ACGCCTGTAG AAGAAGGGAC GCCCTCACAG
541GACACCTCAG GACCCATTCT GTGGGTAAAC CTCACAAGTG CAACTACTGT GGACGAAGCT
601ACAAGCAGCG CAGTTCACTG GAGGAGCACA AGGAACGCTG CCACAACTAT CTCCAGAATG
661TCAGCATGGA GGCTGCTGGG CAGGTCATGA GTCACCATGT ACCTCCTATG GAAGATTGTA
721AGGAACAAGA GCCTATTATG GACAACAATA TTTCTCTGGT GCCTTTTGAG AGACCTGCTG
781TCATAGAGAA GCTCACGGGG AATATGGGAA AACGTAAAAG CTCCACTCCA CAAAAGTTTG
841TGGGGGAAAA GCTCATGCGA TTCAGCTACC CAGATATTCA CTTTGATATG AACTTAACAT
901ATGAGAAGGA GGCTGAGCTG ATGCAGTCTC ATATGATGGA CCAAGCCATC AACAATGCAA
961TCACCTACCT TGGAGCTGAG GCCCTTCACC CTCTGATGCA GCACCCGCCA AGCACAATCG
1021CTGAAGTGGC CCCAGTTATA AGCTCAGCTT ATTCTCAGGT CTATCATCCA AATAGGATAG
1081AAAGACCCAT TAGCAGGGAA ACTGCTGATA GTCATGAAAA CAACATGGAT GGCCCCATCT
1141CTCTCATCAG ACCAAAGAGT CGACCCCAGG AAAGAGAGGC CTCTCCCAGC AATAGCTGCC
1201TGGATTCCAC TGACTCAGAA AGCAGCCATG ATGACCACCA GTCCTACCAA GGACACCCTG
1261CCTTAAATCC CAAGAGGAAA CAAAGCCCAG CTTACATGAA GGAGGATGTC AAAGCTTTGG
1321ATACTACCAA GGCTCCTAAG GGCTCTCTGA AGGACATCTA CAAGGTCTTC AATGGAGAAG
1381GAGAACAGAT TAGGGCCTTC AAGTGTGAGC ACTGCCGAGT CCTTTTCCTA GACCATGTCA
1441TGTACACCAT TCACATGGGT TGCCATGGCT ACCGGGACCC ACTGGAATGC AACATCTGTG
1501GCTACAGAAG CCAGGACCGT TATGAGTTTT CATCACACAT TGTTCGAGGG GAGCACACAT
1561TCCACAACCT AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1621gttgcaacga ac

Download FASTA (ORF) (Full)