Construct: ORF ccsbBroadEn_02697
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007577.1_s300c1, BRDN0000393694
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- UBOX5 (22888)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22888 | UBOX5 | U-box domain containing 5 | NM_014948.4 | 100% | 100% | |
| 2 | human | 22888 | UBOX5 | U-box domain containing 5 | NM_001267584.2 | 94.6% | 87.5% | 1416_1417insGAGCA;1536_1537ins82 |
| 3 | human | 22888 | UBOX5 | U-box domain containing 5 | NM_199415.3 | 90% | 90% | 1254_1255ins162 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1689
- ORF length:
- 1623
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT AATAAATCTT TGCCTCCCAC AGTTCAGACC AAGAATTCAC TGCAACAAGA 121 TATCAGCTGA TGGTTACGAA GTAGAAAATC TCATCTCTGA AGATCTCACA AAGAGAAGTC 181 ATGGTTTCAG GACAGAGTAT TTCATTAAGC CACCAGTCTA TGTGACAGTT TCATTTCCCT 241 TTAATGTGGA AATCTGTAGG ATCAACATAG ACCTCACAGC TGGGGGAGGT CAGAACGTCA 301 CTGGCCTGGA AATGTACACA TCTGCCTCAT CTAGCAGAGT GTCTTGGAAT ACGCCCCAGT 361 GCCGGACCCT GGGCCCAGCT GAGCCATCTG TCCCAGACAA GGAGGCGTTC ACCTTGGTAG 421 GCAAAGTCTT ACTGAAAAAC CAGAGCCAAG TGGTGTTTAG CCACAGGGGC TTCAAGGCCA 481 GGCCCCCTTT TGGCGCGATG GAAGCCACAC TCCCCTCCCC TGCTGTTGTG GCCCAGGAGC 541 TCTGGAATAA AGGGGCTCTT TCCCTTAGCC ACGTGGCCCA CTTAAGGATC TGTATCACCC 601 ATGTGACAGG CGGCGGTATC CCTTGTATCA AGCGGTTGGA AGTGTGGGGT CAGCCGGCCA 661 AGACCTGCTC CCAGGAAGTG ATAGACAGCA TCCTGCTGGT CACCTCAGAG AACCTGCCTC 721 AGGATGTGGC TCTGCAGGCT CCAGCCTTGC CCATGGAAAG TGACTGTGAC CCTGGGGACC 781 AGCCTGAGAG CCAGCAGGCT CCCTCCAGCC TGCAGAAGCT GGCCGAGATC ATTCAGGATG 841 TGCCTGAGGA GTTCCTGGAT CCCATCACCC TGGAGATCAT GCCTTGTCCC ATGCTGCTGC 901 CCTCAGGCAA GGTCATCGAC CAGAGCACAC TGGAGAAGTG TAACCGCAGT GAAGCCACAT 961 GGGGCCGAGT GCCCAGTGAC CCTTTCACGG GGGTAGCTTT TACTCCGCAC TCTCAGCCCC 1021 TGCCTCACCC CTCCCTCAAG GCCCGGATTG ACCATTTCCT GCTCCAGCAC TCCATCCCTG 1081 GCTGCCACCT GCTTGGGAGA GCACAGACGG CATTGGCAGT GATCCCTTCT TCCATTGTTC 1141 TGCCCTCTCA GAAAAGGAAG ATAGAGCAGG CTGAACATGT CCCAGACAGT AACTTTGGTG 1201 TAAATGCTTC CTGTTTTTCT GCCACAAGCC CTTTGGTCTT ACCCACTACC TCAGAGCACA 1261 CTGCTAAGAA AATGAAAGCC ACCAATGAGC CCAGCCTGAC ACATATGGAC TGCTCGACAG 1321 GTCCACTGTC CCACGAGCAG AAGCTGTCAC AAAGCTTGGA AATTGCCTTG GCATCCACCC 1381 TTGGCTCTAT GCCCTCCTTC ACGGCACGGC TGACCAGGGG ACAGCTCCAG CACCTTGGCA 1441 CAAGAGGGAG CAACACTTCC TGGAGGCCTG GCACCGGCTC GGAGCAGCCT GGGAGCATCC 1501 TGGGCCCCGA ATGTGCCTCC TGCAAAAGAG TATTTTCTCC CTACTTCAAA AAGGAGCCGG 1561 TGTACCAGCT GCCCTGCGGC CACCTCCTGT GCCGACCCTG CCTGGGTGAG AAGCAACGCT 1621 CCCTGCCCAT GACGTGCACA GCCTGCCAGC GGCCGGTTGC TAGCCAAGAC GTGCTGCGGG 1681 TCCACTTCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1741 tttgttgcaa cgaac