Transcript: Human NM_199415.3

Homo sapiens U-box domain containing 5 (UBOX5), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Homo sapiens (human)
Gene:
UBOX5 (22888)
Length:
4138
CDS:
142..1605

Additional Resources:

NCBI RefSeq record:
NM_199415.3
NBCI Gene record:
UBOX5 (22888)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_199415.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000004439 CGGCGGTATCCCTTGTATCAA pLKO.1 687 CDS 100% 5.625 7.875 N UBOX5 n/a
2 TRCN0000004437 GAGAAGTGTAACCGCAGTGAA pLKO.1 1009 CDS 100% 4.950 6.930 N UBOX5 n/a
3 TRCN0000426545 ACAGTTTCATTTCCCTTTAAT pLKO_005 301 CDS 100% 15.000 10.500 N UBOX5 n/a
4 TRCN0000435748 GACAGTAACTTTGGTGTAAAT pLKO_005 1261 CDS 100% 13.200 9.240 N UBOX5 n/a
5 TRCN0000004438 CCGGCACATTCCTTTCCTTTA pLKO.1 2675 3UTR 100% 10.800 7.560 N UBOX5 n/a
6 TRCN0000427963 GAACGTCACTGGCCTGGAAAT pLKO_005 369 CDS 100% 10.800 7.560 N UBOX5 n/a
7 TRCN0000004441 CATTGGCAGTGATCCCTTCTT pLKO.1 1187 CDS 100% 4.950 3.465 N UBOX5 n/a
8 TRCN0000004440 TCATGGTTTCAGGACAGAGTA pLKO.1 255 CDS 100% 4.950 3.465 N UBOX5 n/a
9 TRCN0000178893 CCCTTTAATGTGGAAATCTGT pLKO.1 313 CDS 100% 3.000 2.100 N Ubox5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_199415.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02697 pDONR223 100% 90% 90% None 1254_1255ins162 n/a
2 ccsbBroad304_02697 pLX_304 0% 90% 90% V5 1254_1255ins162 n/a
3 TRCN0000473932 TCAGAAAGCGCTGGGTCGTTGGTG pLX_317 19.2% 90% 90% V5 1254_1255ins162 n/a
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