Construct: ORF ccsbBroadEn_02715
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006207.1_s300c1, BRDN0000393004
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WDTC1 (23038)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23038 | WDTC1 | WD and tetratricopeptide re... | NM_015023.5 | 100% | 100% | |
| 2 | human | 23038 | WDTC1 | WD and tetratricopeptide re... | NM_001276252.2 | 99.8% | 99.8% | 949_951delGAA |
| 3 | human | 23038 | WDTC1 | WD and tetratricopeptide re... | XM_011541057.1 | 99.8% | 99.8% | 949_951delGAA |
| 4 | human | 23038 | WDTC1 | WD and tetratricopeptide re... | XM_011541058.3 | 79.7% | 74% | (many diffs) |
| 5 | human | 23038 | WDTC1 | WD and tetratricopeptide re... | XM_017000730.2 | 50.7% | 46.2% | (many diffs) |
| 6 | mouse | 230796 | Wdtc1 | WD and tetratricopeptide re... | NM_199306.4 | 90.1% | 96.8% | (many diffs) |
| 7 | mouse | 230796 | Wdtc1 | WD and tetratricopeptide re... | XM_006538743.3 | 90.1% | 96.8% | (many diffs) |
| 8 | mouse | 230796 | Wdtc1 | WD and tetratricopeptide re... | XM_006538744.3 | 90.1% | 96.8% | (many diffs) |
| 9 | mouse | 230796 | Wdtc1 | WD and tetratricopeptide re... | XM_006538745.1 | 90.1% | 96.8% | (many diffs) |
| 10 | mouse | 230796 | Wdtc1 | WD and tetratricopeptide re... | XM_006538746.1 | 78.7% | 84.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2094
- ORF length:
- 2028
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GAAAGTCAAC ATAACTAGAG ACCTCATCCG TAGGCAGATC AAGGAGCGGG 121 GTGCCCTGAG CTTTGAGCGG CGCTACCATG TCACTGACCC CTTTATCCGG CGGCTGGGCC 181 TGGAAGCAGA GCTGCAGGGT CACTCAGGAT GTGTCAACTG TCTGGAGTGG AATGAGAAAG 241 GAGACTTGCT GGCCTCTGGT TCCGATGACC AGCACACGAT TGTGTGGGAC CCGCTGCACC 301 ACAAGAAGCT GCTCTCCATG CACACGGGAC ACACCGCAAA TATCTTCTCT GTCAAGTTCC 361 TGCCTCACGC TGGGGACCGC ATCTTGATCA CGGGGGCAGC CGACTCTAAG GTGCATGTGC 421 ACGACCTGAC AGTAAAGGAG ACCATCCACA TGTTTGGAGA CCACACAAAC CGGGTGAAGC 481 GCATCGCCAC AGCGCCCATG TGGCCCAACA CATTCTGGAG TGCTGCTGAG GATGGGCTTA 541 TCCGCCAGTA TGACCTTCGA GAGAACAGCA AACACTCGGA GGTGCTGATT GACCTGACAG 601 AGTACTGTGG CCAGCTGGTG GAGGCCAAGT GCCTCACTGT CAACCCCCAG GACAACAACT 661 GCCTGGCAGT TGGGGCCAGC GGGCCCTTCG TGAGGCTCTA TGACATCCGC ATGATCCATA 721 ACCACAGAAA GAGCATGAAG CAGAGCCCTT CAGCGGGTGT GCACACCTTC TGTGACCGGC 781 AGAAACCCCT TCCGGACGGT GCAGCCCAGT ATTACGTAGC AGGTCACCTG CCAGTGAAGC 841 TTCCTGACTA CAACAACCGT TTGAGAGTGC TGGTTGCCAC CTATGTGACC TTCAGCCCCA 901 ATGGCACAGA GCTACTAGTC AACATGGGGG GGGAACAGGT CTATTTGTTT GACTTGACTT 961 ACAAGCAGCG GCCGTACACC TTCCTCTTGC CTAGAAAATG CCACTCCTCG GGGGTCCAGA 1021 ATGGCAAGAT GTCCACCAAC GGTGTGTCCA ACGGTGTGTC CAATGGCCTG CACCTTCATA 1081 GCAATGGCTT CCGGCTGCCG GAGAGTAGGG GACATGTCAG CCCCCAAGTA GAGCTACCAC 1141 CATACCTGGA GCGTGTGAAA CAGCAAGCCA ATGAGGCTTT TGCCTGCCAG CAGTGGACCC 1201 AAGCCATTCA GCTTTACAGC AAGGCTGTGC AGAGGGCCCC TCACAATGCC ATGCTTTATG 1261 GAAACCGAGC AGCAGCCTAC ATGAAGCGCA AGTGGGATGG TGACCACTAT GATGCCCTGA 1321 GGGACTGCCT CAAGGCCATC TCCCTAAACC CATGCCACCT GAAGGCACAC TTTCGCCTGG 1381 CCCGCTGCCT CTTTGAGCTC AAGTATGTGG CTGAAGCCCT GGAGTGCCTG GACGACTTCA 1441 AAGGGAAATT TCCGGAGCAG GCCCACAGCA GCGCTTGTGA TGCATTGGGC CGCGACATCA 1501 CAGCTGCCCT CTTCTCTAAA AATGATGGTG AGGAGAAGAA GGGACCTGGT GGCGGCGCCC 1561 CAGTCCGCCT CCGCAGCACG AGCCGCAAGG ACTCCATCTC AGAGGATGAA ATGGTGCTGC 1621 GGGAGCGAAG CTACGACTAT CAGTTCCGCT ACTGCGGCCA CTGCAACACC ACCACGGATA 1681 TCAAAGAGGC CAATTTCTTT GGCAGCAACG CTCAGTATAT CGTCAGTGGC TCTGACGATG 1741 GCTCCTTCTT CATCTGGGAA AAGGAGACCA CCAACCTGGT CCGTGTGCTC CAAGGGGATG 1801 AGTCCATTGT CAACTGCCTG CAGCCACACC CCAGCTACTG CTTCCTGGCC ACCAGTGGCA 1861 TCGATCCTGT TGTGCGGCTC TGGAACCCCC GACCAGAGAG TGAAGACCTC ACAGGCCGAG 1921 TCGTGGAAGA TATGGAGGGT GCTTCACAGG CCAACCAGCG GCGCATGAAT GCAGACCCGT 1981 TGGAGGTGAT GCTGCTCAAC ATGGGCTACC GGATCACGGG CCTGAGCAGT GGGGGTGCCG 2041 GGGCCTCTGA TGATGAGGAC AGCTCTGAGG GCCAGGTGCA GTGCCGGCCC AGCTACCCAA 2101 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac