Construct: ORF ccsbBroadEn_02863
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011363.1_s300c1, BRDN0000456679
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ARIH1 (25820)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 25820 | ARIH1 | ariadne RBR E3 ubiquitin pr... | NM_005744.5 | 100% | 100% | |
| 2 | mouse | 23806 | Arih1 | ariadne RBR E3 ubiquitin pr... | NM_019927.2 | 95.5% | 99.1% | (many diffs) |
| 3 | mouse | 23806 | Arih1 | ariadne RBR E3 ubiquitin pr... | XM_006511140.3 | 85.1% | 69% | (many diffs) |
| 4 | mouse | 23806 | Arih1 | ariadne RBR E3 ubiquitin pr... | XM_011242739.1 | 76.4% | 76.3% | (many diffs) |
| 5 | mouse | 23806 | Arih1 | ariadne RBR E3 ubiquitin pr... | XM_006511141.1 | 73.4% | 78.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1737
- ORF length:
- 1671
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA CTCGGACGAG GGCTACAACT ACGAGTTCGA CGAGGACGAG GAGTGCAGTG 121 AGGAGGACAG CGGCGCCGAG GAGGAGGAGG ACGAAGACGA CGACGAGCCG GACGATGATA 181 CCCTGGATCT GGGCGAGGTG GAGCTGGTGG AGCCCGGGCT GGGCGTCGGC GGGGAGCGGG 241 ACGGACTGCT GTGCGGGGAG ACGGGCGGTG GCGGCGGCAG CGCTCTGGGG CCCGGCGGTG 301 GCGGCGGCGG CGGCGGCGGC GGTGGTGGTG GCGGGCCGGG GCATGAGCAG GAGGAGGATT 361 ACCGCTACGA GGTGCTCACG GCCGAGCAGA TTCTACAACA CATGGTGGAA TGTATCCGGG 421 AGGTCAACGA GGTCATCCAG AATCCAGCAA CTATCACAAG AATACTCCTT AGCCACTTCA 481 ATTGGGATAA AGAGAAGCTA ATGGAAAGGT ACTTTGATGG AAACCTGGAG AAGCTCTTTG 541 CTGAGTGTCA TGTAATTAAT CCAAGTAAAA AGTCTCGAAC ACGCCAGATG AATACAAGGT 601 CATCAGCACA GGATATGCCT TGTCAGATCT GCTACTTGAA CTACCCTAAC TCGTATTTCA 661 CTGGCCTTGA ATGTGGACAT AAGTTTTGTA TGCAGTGCTG GAGTGAATAT TTAACTACCA 721 AAATAATGGA AGAAGGCATG GGTCAGACTA TTTCGTGTCC TGCTCATGGT TGTGATATCT 781 TAGTGGATGA CAACACAGTT ATGCGCCTGA TCACAGATTC AAAAGTTAAA TTAAAGTATC 841 AGCATTTAAT AACAAATAGC TTTGTAGAGT GCAATCGACT GTTAAAGTGG TGTCCTGCCC 901 CAGATTGCCA CCATGTTGTT AAAGTCCAAT ATCCTGATGC TAAACCTGTT CGCTGCAAAT 961 GTGGGCGCCA ATTTTGCTTT AACTGTGGAG AAAATTGGCA TGATCCTGTT AAATGTAAGT 1021 GGTTAAAGAA ATGGATTAAA AAGTGTGATG ATGACAGTGA AACCTCCAAT TGGATTGCAG 1081 CCAACACAAA GGAATGTCCC AAATGCCATG TCACAATTGA GAAGGATGGT GGTTGTAATC 1141 ACATGGTCTG TCGTAACCAG AATTGTAAAG CAGAGTTTTG CTGGGTGTGT CTTGGCCCAT 1201 GGGAACCACA TGGATCTGCC TGGTACAACT GTAACCGCTA TAATGAGGAT GATGCAAAGG 1261 CAGCAAGAGA TGCACAGGAG CGATCTAGGG CAGCCCTGCA GAGGTACCTG TTCTACTGTA 1321 ATCGCTATAT GAACCACATG CAGAGCCTGC GCTTTGAGCA CAAACTATAT GCTCAGGTGA 1381 AACAGAAAAT GGAGGAGATG CAGCAGCACA ACATGTCCTG GATTGAGGTG CAGTTCCTGA 1441 AGAAGGCAGT TGATGTCCTC TGCCAGTGTC GTGCCACACT CATGTACACT TATGTCTTCG 1501 CTTTCTACCT CAAAAAGAAT AACCAGTCCA TTATCTTTGA GAATAACCAA GCAGATCTAG 1561 AGAATGCCAC AGAGGTGCTC TCGGGCTACC TTGAACGAGA TATTTCCCAA GATTCTCTGC 1621 AGGATATAAA GCAGAAAGTA CAAGACAAGT ACAGATACTG TGAGAGTCGA CGAAGGGTTT 1681 TGTTACAGCA TGTGCATGAA GGCTATGAAA AAGATCTGTG GGAGTACATT GAGGACTGCC 1741 CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg 1801 aac