Construct: ORF ccsbBroadEn_02920
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004597.1_s300c1, BRDN0000391637
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SERBP1 (26135)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26135 | SERBP1 | SERPINE1 mRNA binding prote... | NM_001018068.2 | 100% | 100% | |
| 2 | human | 26135 | SERBP1 | SERPINE1 mRNA binding prote... | NM_001018067.2 | 98.5% | 98.5% | 606_623del |
| 3 | human | 26135 | SERBP1 | SERPINE1 mRNA binding prote... | NM_015640.4 | 96.2% | 96.2% | 677_678ins45 |
| 4 | human | 26135 | SERBP1 | SERPINE1 mRNA binding prote... | NM_001018069.2 | 94.8% | 94.8% | 606_623del;695_696ins45 |
| 5 | mouse | 66870 | Serbp1 | serpine1 mRNA binding prote... | NM_001113564.1 | 93.1% | 98.2% | (many diffs) |
| 6 | mouse | 66870 | Serbp1 | serpine1 mRNA binding prote... | NM_025814.2 | 91.7% | 96.8% | (many diffs) |
| 7 | mouse | 66870 | Serbp1 | serpine1 mRNA binding prote... | NM_001113566.1 | 89.5% | 94.7% | (many diffs) |
| 8 | mouse | 66870 | Serbp1 | serpine1 mRNA binding prote... | NM_001113565.1 | 88.2% | 93.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1272
- ORF length:
- 1206
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TGGGCACTTA CAGGAAGGCT TCGGCTGCGT GGTCACCAAC CGATTCGACC 121 AGTTATTTGA CGACGAATCG GACCCCTTCG AGGTGCTGAA GGCAGCAGAG AACAAGAAAA 181 AAGAAGCCGG CGGGGGCGGC GTTGGGGGCC CTGGGGCCAA GAGCGCAGCT CAGGCCGCGG 241 CCCAGACCAA CTCCAACGCG GCAGGCAAAC AGCTGCGCAA GGAGTCCCAG AAAGACCGCA 301 AGAACCCGCT GCCCCCCAGC GTTGGCGTGG TTGACAAGAA AGAGGAGACG CAGCCGCCCG 361 TGGCGCTTAA GAAAGAAGGA ATAAGACGAG TTGGAAGAAG ACCTGATCAA CAACTTCAGG 421 GTGAAGGGAA AATAATTGAT AGAAGACCAG AAAGGCGACC ACCTCGTGAA CGAAGATTCG 481 AAAAGCCACT TGAAGAAAAG GGTGAAGGAG GCGAATTTTC AGTTGATAGA CCGATTATTG 541 ACCGACCTAT TCGAGGTCGT GGTGGTCTTG GAAGAGGTCG AGGGGGCCGT GGACGTGGAA 601 TGGGCCGAGG AGATGGATTT GATTCTCGTG GCAAACGTGA ATTTGATAGG CATAGTGGAA 661 GTGATAGATC TGGCCTGAAG CACGAGGACA AACGTGGAGG TAGCGGATCT CACAACTGGG 721 GAACTGTCAA AGACGAATTA ACAGAGTCCC CCAAATACAT TCAGAAACAA ATATCTTATA 781 ATTACAGTGA CTTGGATCAA TCAAATGTGA CTGAGGAAAC ACCTGAAGGT GAAGAACATC 841 ATCCAGTGGC AGACACTGAA AATAAGGAGA ATGAAGTTGA AGAGGTAAAA GAGGAGGGTC 901 CAAAAGAGAT GACTTTGGAT GAGTGGAAGG CTATTCAAAA TAAGGACCGG GCAAAAGTAG 961 AATTTAATAT CCGAAAACCA AATGAAGGTG CTGATGGGCA GTGGAAGAAG GGATTTGTTC 1021 TTCATAAATC AAAGAGTGAA GAGGCTCATG CTGAAGATTC GGTTATGGAC CATCATTTCC 1081 GGAAGCCAGC AAATGATATA ACGTCTCAGC TGGAGATCAA TTTTGGAGAC CTTGGCCGCC 1141 CAGGACGTGG CGGCAGGGGA GGACGAGGTG GACGTGGGCG TGGTGGGCGC CCAAACCGTG 1201 GCAGCAGGAC CGACAAGTCA AGTGCTTCTG CTCCTGATGT GGATGACCCA GAGGCATTCC 1261 CAGCTCTGGC TTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1321 caatttgttg caacgaac