Construct: ORF ccsbBroadEn_02981
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017230.1_s300c1, BRDN0000455975
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GPR160 (26996)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26996 | GPR160 | G protein-coupled receptor 160 | NM_014373.3 | 100% | 100% | |
| 2 | human | 26996 | GPR160 | G protein-coupled receptor 160 | XM_005247346.4 | 100% | 100% | |
| 3 | human | 26996 | GPR160 | G protein-coupled receptor 160 | XM_005247347.4 | 100% | 100% | |
| 4 | human | 26996 | GPR160 | G protein-coupled receptor 160 | XM_017006161.2 | 100% | 100% | |
| 5 | human | 26996 | GPR160 | G protein-coupled receptor 160 | XM_024453449.1 | 100% | 100% | |
| 6 | human | 26996 | GPR160 | G protein-coupled receptor 160 | XM_024453450.1 | 100% | 100% | |
| 7 | human | 26996 | GPR160 | G protein-coupled receptor 160 | XM_024453451.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1080
- ORF length:
- 1014
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TGCTCTCTCT TCAGAGAACT GCTCTTTTCA GTACCAGTTA CGTCAAACAA 121 ACCAGCCCCT AGATGTTAAC TATCTGCTAT TCTTGATCAT ACTTGGGAAA ATATTATTAA 181 ATATCCTTAC ACTAGGAATG AGAAGAAAAA ACACCTGTCA AAATTTTATG GAATATTTTT 241 GCATTTCACT AGCATTCGTT GATCTTTTAC TTTTGGTAAA CATTTCCATT ATATTGTATT 301 TCAGGGATTT TGTACTTTTA AGCATTAGGT TCACTAAATA CCACATCTGC CTATTTACTC 361 AAATTATTTC CTTTACTTAT GGCTTTTTGC ATTATCCAGT TTTCCTGACA GCTTGTATAG 421 ATTATTGCCT GAATTTCTCT AAAACAACCA AGCTTTCATT TAAGTGTCAA AAATTATTTT 481 ATTTCTTTAC AGTAATTTTA ATTTGGATTT CAGTCCTTGC TTATGTTTTG GGAGACCCAG 541 CCATCTACCA AAGCCTGAAG GCACAGAATG CTTATTCTCG TCACTGTCCT TTCTATGTCA 601 GCATTCAGAG TTACTGGCTG TCATTTTTCA TGGTGATGAT TTTATTTGTA GCTTTCATAA 661 CCTGTTGGGA AGAAGTTACT ACTTTGGTAC AGGCTATCAG GATAACTTCC TATATGAATG 721 AAACTATCTT ATATTTTCCT TTTTCATCCC ACTCCAGTTA TACTGTGAGA TCTAAAAAAA 781 TATTCTTATC CAAGCTCATT GTCTGTTTTC TCAGTACCTG GTTACCATTT GTACTACTTC 841 AGGTAATCAT TGTTTTACTT AAAGTTCAGA TTCCAGCATA TATTGAGATG AATATTCCCT 901 GGTTATACTT TGTCAATAGT TTTCTCATTG CTACAGTGTA TTGGTTTAAT TGTCACAAGC 961 TTAATTTAAA AGACATTGGA TTACCTTTGG ATCCATTTGT CAACTGGAAG TGCTGCTTCA 1021 TTCCACTTAC AATTCCTAAT CTTGAGCAAA TTGAAAAGCC TATATCAATA ATGATTTGTT 1081 ACCCAACTTT CTTGTACAAA GTTGGcatta taagaaagca ttgcttatca atttgttgca 1141 acgaac